Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,029,681 – 10,029,776 |
Length | 95 |
Max. P | 0.638726 |
Location | 10,029,681 – 10,029,776 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.99 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -20.41 |
Energy contribution | -20.63 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -1.48 |
Structure conservation index | 0.65 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10029681 95 - 27905053 AUCCGCGCACCACUCG-------AGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA ....((((.......(-------...--.)...((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))).)). ( -24.90) >DroPse_CAF1 99505 95 - 1 -------CUCCACUCGUGUUGGGGGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA -------((((((....).)))))((--....(((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))..)). ( -28.90) >DroEre_CAF1 103114 95 - 1 AGCCACGCACCACUCG-------AGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA (((...((........-------.))--.....((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))))... ( -24.00) >DroMoj_CAF1 123609 96 - 1 -GCUGGCUGGCAGAGG-------AGC--CCGCUUGACAUGCCUGGCAGCGCUUAAAGCGGGCUCCUCGUAUGGCUUGGUGCAAUGCCUUUUAAAGUGUCAGCUGCU -((.((((((((((((-------(((--((((((....(((......)))....)))))))))))))((((.((.....)).)))).........)))))))))). ( -49.10) >DroAna_CAF1 111569 96 - 1 ACCCCCUCGGCACUCG-------AGGUGCCAUCUGACAUAGCUGGGAGCGCUUAAAGCCGG-AUUUAAGAUGGCUUUGU-CAAUGCCUUUUA-AGUGUCAGCUGCA ........(((((...-------..)))))..(((((((...((((((.((.((((((((.-........)))))))).-....))))))))-.)))))))..... ( -30.40) >DroPer_CAF1 100669 95 - 1 -------CUCCACUCGUGUUGGAGGC--CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG-AUUUUAUGUGGCUUUGU-CAAUGCCUUUUAAAGUGUCAGCUGCA -------((((((....).)))))((--....(((((((....((((.....((((((((.-((...)).)))))))).-...)))).......)))))))..)). ( -29.80) >consensus __CC_C_CACCACUCG_______AGC__CCAUUUGACAUGCCUGGCAGCGCUUAAAGCCGG_AUUUUAUGUGGCUUUGU_CAAUGCCUUUUAAAGUGUCAGCUGCA .............................((.(((((((....((((.....((((((((..........)))))))).....)))).......))))))).)).. (-20.41 = -20.63 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006