Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,016,944 – 10,017,038 |
Length | 94 |
Max. P | 0.747894 |
Location | 10,016,944 – 10,017,038 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 76.54 |
Mean single sequence MFE | -25.19 |
Consensus MFE | -16.39 |
Energy contribution | -15.87 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.52 |
Mean z-score | -1.39 |
Structure conservation index | 0.65 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10016944 94 - 27905053 AAUCAACGGAGAGUAACAAAGGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU-------UUUGGGUGGCUCUAUGCAGAUUGUAGGGGUUAC ((((..((.(((((.((....(((((((((((((((.((......)))))))..)))))))-------)))..)).))))).))..))))........... ( -25.30) >DroSec_CAF1 94668 94 - 1 GACCAACGAAGAGUAACAAAGGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU-------UUUGGGUGGCUCUAUUCAGAUUGUGGGGGUUGC ((((.(((((((((.((....(((((((((((((((.((......)))))))..)))))))-------)))..)).))))).......))))...)))).. ( -27.21) >DroSim_CAF1 94832 94 - 1 GACCAACAACGAGUAACAAAGGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU-------UUUGGGUGGCUCUAUUCAGAUUGUGGGGGUCGC ((((.((((((((((.((...(((((((((((((((.((......)))))))..)))))))-------)))...))....))))).).))))...)))).. ( -28.30) >DroEre_CAF1 99212 94 - 1 GGCCAACAAAGAGUCUCAAAAGAAGUGUCAUUACCAGCUGGUGAAAGUGGUGAAGUGGCAA-------UUUGGGUUGCUCUAUCCAGAUUGUGGCGGCUAC ((((.(((.....(((....)))..)))..((((((.((......)))))))).((.((((-------(((((((......))))))))))).)))))).. ( -30.40) >DroYak_CAF1 99001 94 - 1 GGCCAACAAAGAGUAUCAGAAGAAGUGUCAUUACCAGCUUGUGAGAGUGGUGAAGUGGCAA-------CUUGGGUUGUCUUACCCAGAUUGUGGGGGUUAC ((((..((......(((.....((((((((((((((.(((....))))))))..))))).)-------)))((((......)))).)))..))..)))).. ( -26.40) >DroAna_CAF1 108162 97 - 1 GAGCAGGAAAAAGUUGGCAAAGAAGUGUCAUUACCAGCUGGUAAAAGUGGUACAAGUCCAUCAUUAAACUUAUGUUUUAUU--UAAGAUUUUAGAGACU-- .....(((......(((((......))))).(((((.((......)))))))....))).((.(((((((((.........--))))..))))).))..-- ( -13.50) >consensus GACCAACAAAGAGUAACAAAAGAAGUGUCAUUACCAACUGGUGAAAGUGGUGAAGUGGCAU_______UUUGGGUGGCUCUAUUCAGAUUGUGGGGGUUAC ((((.((((................((((((((((.(((......)))))))..)))))).........((((((......)))))).))))...)))).. (-16.39 = -15.87 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:39 2006