Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,012,649 – 10,012,743 |
Length | 94 |
Max. P | 0.998329 |
Location | 10,012,649 – 10,012,743 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.26 |
Mean single sequence MFE | -31.44 |
Consensus MFE | -29.26 |
Energy contribution | -29.46 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.21 |
Structure conservation index | 0.93 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10012649 94 + 27905053 CACGAUUUGCUCUGGCCUUGUGUUGGUAAGUGGAGGAGCCAAUCAGCCAUCGAUGGGCCAGGCUAAUUGAAAUCGUGUGUGAGAGUGUUCCAGG-- ((((((((((.(((((((..((.((((...(((.....)))....)))).))..)))))))))......)))))))).................-- ( -30.80) >DroSec_CAF1 90278 94 + 1 CACGAUUUGCUCUGGCCUUGUGUUGGUAAGUGGAGGAGCCAAUCAGCCAUCGAUGGGCCAGGCUAAUUGAAAUCGUGUGUGAGAGUGUUCCAGG-- ((((((((((.(((((((..((.((((...(((.....)))....)))).))..)))))))))......)))))))).................-- ( -30.80) >DroSim_CAF1 90495 94 + 1 CACGAUUUGCCCUGGCCUUGUGUUGGUAAGUGGAGGAGCCAAUCAGCCAUCGAUGGGCCAGGCUAAUUGAAAUCGUGUGUGAGAGUGUUCCAGG-- (((((((((((.((((((..((.((((...(((.....)))....)))).))..)))))))))......)))))))).................-- ( -30.80) >DroEre_CAF1 94883 96 + 1 CACGAUUUGGUCUGGCCUUGUGUUGGUAAGUGGAGCAGCCAAUCAGCCAUCGACGGGCCAGGCUAAUUGAAAUCGUGUGUGAGAGUGUUCCAGGAA ((((((((((((((((((..((.((((...(((.....)))....)))).))..))))))))))).....)))))))................... ( -34.00) >DroYak_CAF1 94631 94 + 1 CACGAUUUGCUCUGGCCUUGUGUUGGUAAGUGGAGCAGCCAAUCAGCCAUCGAUGGGCCAGGCUAAUUGAAAUCGUGUGUGAGAGUGUUCCAGG-- ((((((((((.(((((((..((.((((...(((.....)))....)))).))..)))))))))......)))))))).................-- ( -30.80) >consensus CACGAUUUGCUCUGGCCUUGUGUUGGUAAGUGGAGGAGCCAAUCAGCCAUCGAUGGGCCAGGCUAAUUGAAAUCGUGUGUGAGAGUGUUCCAGG__ ((((((((((.(((((((..((.((((...(((.....)))....)))).))..)))))))))......))))))))................... (-29.26 = -29.46 + 0.20)
Location | 10,012,649 – 10,012,743 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.26 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -24.46 |
Energy contribution | -24.66 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.97 |
SVM decision value | 3.07 |
SVM RNA-class probability | 0.998329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10012649 94 - 27905053 --CCUGGAACACUCUCACACACGAUUUCAAUUAGCCUGGCCCAUCGAUGGCUGAUUGGCUCCUCCACUUACCAACACAAGGCCAGAGCAAAUCGUG --.................((((((((......((((((((....(.(((.(((.(((.....))).)))))).)....)))))).)))))))))) ( -26.00) >DroSec_CAF1 90278 94 - 1 --CCUGGAACACUCUCACACACGAUUUCAAUUAGCCUGGCCCAUCGAUGGCUGAUUGGCUCCUCCACUUACCAACACAAGGCCAGAGCAAAUCGUG --.................((((((((......((((((((....(.(((.(((.(((.....))).)))))).)....)))))).)))))))))) ( -26.00) >DroSim_CAF1 90495 94 - 1 --CCUGGAACACUCUCACACACGAUUUCAAUUAGCCUGGCCCAUCGAUGGCUGAUUGGCUCCUCCACUUACCAACACAAGGCCAGGGCAAAUCGUG --.................((((((((......((((((((....(.(((.(((.(((.....))).)))))).)....))))).))))))))))) ( -26.00) >DroEre_CAF1 94883 96 - 1 UUCCUGGAACACUCUCACACACGAUUUCAAUUAGCCUGGCCCGUCGAUGGCUGAUUGGCUGCUCCACUUACCAACACAAGGCCAGACCAAAUCGUG ...................((((((((......(.((((((.((.(.(((.(((.(((.....))).)))))).)))..)))))).).)))))))) ( -22.70) >DroYak_CAF1 94631 94 - 1 --CCUGGAACACUCUCACACACGAUUUCAAUUAGCCUGGCCCAUCGAUGGCUGAUUGGCUGCUCCACUUACCAACACAAGGCCAGAGCAAAUCGUG --.................((((((((......((((((((....(.(((.(((.(((.....))).)))))).)....)))))).)))))))))) ( -26.00) >consensus __CCUGGAACACUCUCACACACGAUUUCAAUUAGCCUGGCCCAUCGAUGGCUGAUUGGCUCCUCCACUUACCAACACAAGGCCAGAGCAAAUCGUG ...................((((((((......((((((((....(.(((.(((.(((.....))).)))))).)....)))))).)))))))))) (-24.46 = -24.66 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:38 2006