Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,006,250 – 10,006,341 |
Length | 91 |
Max. P | 0.808023 |
Location | 10,006,250 – 10,006,341 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -18.70 |
Energy contribution | -18.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 1.00 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10006250 91 - 27905053 GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. ( -18.70) >DroSec_CAF1 88625 91 - 1 GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. ( -18.70) >DroSim_CAF1 88825 91 - 1 GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. ( -18.70) >consensus GCAAAAGGACAAAAAGGGAUACGCCAGGAGCAGUUUGGGAACAUAUCAGCGAGCAGGAAGUUGGGAUGGGAAUAAGGCUGGAAGAGGCGGA .....................((((.....((((((.....(((..((((.........))))..)))......)))))).....)))).. (-18.70 = -18.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:36 2006