Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 10,003,440 – 10,003,549 |
Length | 109 |
Max. P | 0.625226 |
Location | 10,003,440 – 10,003,549 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.38 |
Mean single sequence MFE | -40.09 |
Consensus MFE | -19.97 |
Energy contribution | -19.67 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.29 |
Mean z-score | -2.01 |
Structure conservation index | 0.50 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10003440 109 - 27905053 GCUGACCACGCGAUAUGUUCCAUGAGAUUCGGUCACGGCGGCC---ACCGCCACCAUUGUGGAGACCGUGGAGGCCGCGCAGAUGGAGACGGAGCUGCUGUAG------GCCGGCAAA-- (((..(((((.(.....(((((..(.....(((...(((((..---.)))))))).)..))))).)))))).((((((((((.((....))...)))).)).)------))))))...-- ( -44.60) >DroVir_CAF1 123909 114 - 1 AUUGACCAACCGUUACGUUCCAUGAGAUUCGGUCGCGGCGGCC---ACAACAACCAUCGUGGAGACCGUGGAGGCCGCACAAAUGGAAACGGAGCUGGUCUAAAAUUG-GUCAGAAAU-- .(((((((((((((.((((((((......(((((.(.((((((---((..........))))...)))).).))))).....)))).)))).))).))).......))-)))))....-- ( -40.11) >DroGri_CAF1 109012 120 - 1 ACUGACCACAAGAUACGUUCCAUGAGAUUCGGUCACGGCGGCCCCAACAACAACAAUCGUGGAGACAAUGGAGGCCGCCCAAAUGGAAACGGAACUGGUCUAAGUUUGGGUCAGAAAUUU .((((((.((((((..(((((...............((((((((((......((....))(....)..))).))))))).....(....))))))..)))).....))))))))...... ( -43.10) >DroWil_CAF1 92335 109 - 1 GCUGACUACACGUUAUGUUCCAUGAGAAUCACUCACAGCGGCC---ACAACAACAAUCGUUGAGACUAUGGAGGCCGCACAAAUGGAAACGGAGCUGCUCUAA------GCCAGCCUA-- ((((.((....((...(((((.((((.....))))..((((((---....((((....))))...(....).))))))......(....)))))).))....)------).))))...-- ( -32.80) >DroMoj_CAF1 112354 114 - 1 UCUGACCACAAGGUACGUUCCAUGAGAUUCGGUCGCGGCGGCC---ACAACGACCAUCGUGGAGACAGUGGAGGCCGCUCAAAUGGAAACGGAGCUUGUCUAAAGCUG-GUCAGCAAU-- .((((((........((((((((..(((...)))(((((..((---((.(((.....)))(....).))))..)))))....)))).)))).(((((.....))))))-)))))....-- ( -44.60) >DroPer_CAF1 89408 109 - 1 ACUGACCACGCGCUAUGUUCCAUGAGAUUCGGUCACGGCGCCU---ACGGUCACCAUUGUGGAGACCGUCGAGGCUGCCCAAAUGGAAACGGAGCUGCUCUAA------GCCACUAAC-- .........(((((.((((((((..(((...)))..(((((((---((((((.((.....)).))))))..)))).)))...)))).)))).))).)).....------.........-- ( -35.30) >consensus ACUGACCACACGAUACGUUCCAUGAGAUUCGGUCACGGCGGCC___ACAACAACCAUCGUGGAGACCGUGGAGGCCGCACAAAUGGAAACGGAGCUGCUCUAA______GCCAGCAAU__ ................(((((................((((((..........((.....))..........))))))......(....))))))......................... (-19.97 = -19.67 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:35 2006