Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,999,749 – 9,999,856 |
Length | 107 |
Max. P | 0.857055 |
Location | 9,999,749 – 9,999,856 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.64 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -23.60 |
Energy contribution | -24.30 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.04 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9999749 107 + 27905053 GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCUAAAGUUAAGCCGAGCGAGAAGGACAAGGUAGCUGCGAAAACUUUUGGCGGCCAACUGUUGAUAGUUAGC (((.(((((.............)))))........(((((((((..((..(((...............)))))...))).)))))).)))(((((....)))))... ( -22.58) >DroSec_CAF1 82143 107 + 1 GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCCAAAGUUAAGCCGAGCGAGAAGGACAAGGUAGCUGCGAAAACUUUUGGCGGCCAACUGUUGAUAGUUGGC ....(((((.............)))))........(((((((((..((..(((...............)))))...))).)))))).((((((((....)))))))) ( -27.68) >DroSim_CAF1 82310 107 + 1 GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCCAAAGUUAAGCCGAGCGAGAAGGACAAGGUAGCUGCGAAAACUUUUGGUGGCCAACUGUUGAUAGUUGGC ....(((((.............)))))........(((((((((..((..(((...............)))))...))).)))))).((((((((....)))))))) ( -25.38) >DroEre_CAF1 86693 107 + 1 GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCCAAAGUUAAGCCGAGCGAGAAGGACAAGGUAGCUGGGAAAACUUUUGGCGGCCAACUGUUGAUAGUUGGC ....(((((.............)))))........(((((((((...((.(((...............))).))..))).)))))).((((((((....)))))))) ( -31.88) >DroYak_CAF1 86346 107 + 1 GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCCAAAGUUAAGCCGAGCGAGAAGGACAAGGUAGCUGCGAAAACUUUUGGCGGCCAACUGUUGAUAGUUGGC ....(((((.............)))))........(((((((((..((..(((...............)))))...))).)))))).((((((((....)))))))) ( -27.68) >DroAna_CAF1 92846 101 + 1 GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCUAAAGUUAAGCCGAGCGAGACGCGCCAGGA-----UGAAAA-UUUCUCCAGCCAACUGUUGAUAGUUGGC (((.(((.(((.(((((((............)))))))....))).)))..(((...)))))).(((-----.((...-..))))).((((((((....)))))))) ( -29.30) >consensus GGCAGGCGUAAAAGUUAUAAAAAUGCCAAAAUAUAGCCAAAGUUAAGCCGAGCGAGAAGGACAAGGUAGCUGCGAAAACUUUUGGCGGCCAACUGUUGAUAGUUGGC (((.(((((.............)))))......((((....)))).)))..((.(((((...................))))).)).((((((((....)))))))) (-23.60 = -24.30 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:33 2006