Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,999,076 – 9,999,189 |
Length | 113 |
Max. P | 0.832712 |
Location | 9,999,076 – 9,999,189 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.36 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -21.59 |
Energy contribution | -22.70 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.15 |
Mean z-score | -2.68 |
Structure conservation index | 0.66 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9999076 113 + 27905053 AAAGUUGCUGGCCAACGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGUUGUCCGCUGUACAAUAUACGUUAAAUGUCAAGUU ...((((.....))))(((....((((((((((((....))))))))))))...)))...(((.(((((((.((((((.....))))))....))))))).....)))..... ( -38.60) >DroSec_CAF1 81438 113 + 1 AAAGUUGCUGGCCAACGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAACGUUGUCAGCUGUACAAUAUUCGUUAAAUGUCAAGUU ...((.((((((.((((((....((((((((((((....))))))))))))...))).....(((((....))))).)))))))))...))...................... ( -38.60) >DroEre_CAF1 85997 107 + 1 AAAGUUGCUGGCCAACGACUUAGUGGCAGCUUUAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUACGUAUACGCUGCAUUGUAAGCUGUAUAAUAGACGUUAA------AGUU ...((((.....))))(((((..(((((((((.((....)).)))))))))((((((...(....).((((((((........))).)))))...)))))).)------)))) ( -26.40) >DroYak_CAF1 85627 113 + 1 AAAGUUGCUGGCCAACGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGCAGUCAGCUGCACUAUAGACAUUAAAUGUCAAGUU ..(((.((.(((....(((....((((((((((((....))))))))))))...)))...((((((((.......)))))))).))))))))...(((((...)))))..... ( -41.50) >DroAna_CAF1 92094 113 + 1 AAAGUUACUGGCCAAAGACUUAGCGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGUGCUGUCCAUGGUGCGUUAGAGGUUAAAUGUCAAGUU ..........((((..(((..((((((((((((((....)))))))))))...........((((((....))))))))))))..))))(((((........)))))...... ( -33.80) >DroPer_CAF1 84364 93 + 1 CCAGUUGCUGGCCAAAGUCUUAGGGGCGGUUGAAAGUGCUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAG--------------------AGGUUAAAUGUCAAGUU ........(((((..((((((.((((((((((((.....))))).))))).....)).))))))(((....)))..--------------------.)))))........... ( -17.80) >consensus AAAGUUGCUGGCCAACGACUUAGUGGCAGCUUAAAGCACUUUAAGUUGCCAAAUGUCAAAGAUUGCGUAUACGCAGCGUUGUCAGCUGUACAAUAGACGUUAAAUGUCAAGUU ......((((((....(((....((((((((((((....))))))))))))...))).....(((((....))))).............................))).))). (-21.59 = -22.70 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:32 2006