Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,994,888 – 9,994,990 |
Length | 102 |
Max. P | 0.962304 |
Location | 9,994,888 – 9,994,990 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.64 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -29.87 |
Energy contribution | -29.11 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.16 |
Mean z-score | -2.02 |
Structure conservation index | 0.82 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9994888 102 + 27905053 AUUGAGGAGGAGGCC-------AUCAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCUAUUUUCCA-AGGAACCAGGAGCAAAGAGUUCC ...(((((.(((((.-------..(.(((((((((((.....)))).....))))))).)..))))).)))))(((((.(.((((.-........)))).).)))))... ( -34.70) >DroSec_CAF1 77279 103 + 1 AUUGAGGAGGAGGCC-------AGCAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCC ..((((((.(((((.-------(((.(((((((((((.....)))).....))))))).)))))))).)))))).....((((.....))))...(((((.....))))) ( -38.60) >DroSim_CAF1 77408 103 + 1 AUUGAGGAGGAGGCC-------AGCAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCC ..((((((.(((((.-------(((.(((((((((((.....)))).....))))))).)))))))).)))))).....((((.....))))...(((((.....))))) ( -38.60) >DroEre_CAF1 82046 102 + 1 AUUGAGGAGGCGACC-------AACAACCAGAUGCGGACCUGCCGGCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCC-CGUGGAGCCAGGAGCAAAGAGUUCC ..((((((((((((.-------..(((.(((((((((.....)).))))))).)))...))))))...)))))).((((.....-.)))).....(((((.....))))) ( -34.00) >DroYak_CAF1 81365 110 + 1 AUUGAGGAGGAGACCAACUACCAACAACCAGAUGCGGACCUGCCGGCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCCAAGGAACCAGGAGCAAAGAGUUCC ..((((((.(((((.(((..((((....(((((((((.....)).))))))).))))..)))))))).)))))).....((((.....))))...(((((.....))))) ( -36.50) >consensus AUUGAGGAGGAGGCC_______AACAGCCAGAUGCGGACCUGCCGCCAUUUGUUUGGCCGUUGUCUUAUCCUCACUCACUUCCCCAAAGGAACCAGGAGCAAAGAGUUCC ..((((((.(((((..........(((.(((((((((.....))).)))))).)))......))))).)))))).....((((.....))))...(((((.....))))) (-29.87 = -29.11 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:29 2006