Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,989,099 – 9,989,216 |
Length | 117 |
Max. P | 0.651680 |
Location | 9,989,099 – 9,989,216 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.01 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -18.67 |
Energy contribution | -19.53 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.37 |
Mean z-score | -1.88 |
Structure conservation index | 0.61 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9989099 117 - 27905053 UUGCCGACCACAAAUACUAUGUCCCUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCUCUGAAA-AAAUUAAGUGGUCUUAAUUACUAAGCACUA--CGUAAGGUAAUC (((((((((((........((((((((((((..((....))))))))...))))))..(((((.......)))))-.......))))))....((((.........--.))))))))).. ( -32.40) >DroSec_CAF1 71618 118 - 1 UUGCCGACCACAAAUACUAUGUCCUUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCCCUGAAAAAAAUCAAGUGGUCUUAAUUACUAAGCACUC--UGUACGGUAAUC (((((((((((.............(((((((..((....)))))))))..(((((.......)))))................))))))...........((....--.))..))))).. ( -30.40) >DroSim_CAF1 71640 118 - 1 UUGCCGACCACAAAUACUAUGUCCCUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCCCUGAAAAAAAUCAAGUGGUCUUAAUUACUAAGCACUC--UGUAAGGAAAUC ...((((((((........((((((((((((..((....))))))))...))))))..(((((.......)))))........))))))....((((.........--.))))))..... ( -29.80) >DroEre_CAF1 76387 118 - 1 UUGCCGACCACAAAAACUAUGUCCUUGGGACUAAGAUUCCUAUCCAAAUUGGGACAGGUUUCGCCCUCCCUGGAAAUAUGCAAGUGGUCGUAAUUACUUAGCACUG--UGCAAGGUAAUC ....(((((((......(((.(((..((((....((..(((.(((......))).)))..))....)))).))).))).....)))))))..(((((((.((....--.)).))))))). ( -38.40) >DroYak_CAF1 74572 118 - 1 UUGCCGACCACAAAAACUAUGUCCUUGGGGCUAAGAUUCCUGUCCAAAUUGGGGCAUGUUUCGCCCUCCCUGGAAAAAUGCAAGUGGUCUUAAUUACUUAGCAGUG--UUUAAGGUAAUC (((((((((((..........(((..(((((...((..(.(((((......))))).)..)))))))....))).........))))))((((.((((....))))--.))))))))).. ( -35.41) >DroAna_CAF1 81576 114 - 1 UUGGCAAUAACGAAUACUAUGUCAUUUGGGUUGAUGUUCCUAUUCAGAUUUGGGCACGUUUCUCCCUUCCUACAAAAACAUAAUUAGACUGAA------AACAUUCUACUUACUUUAAUU .(((((.............)))))...(((..(((((.((((........)))).)))))...)))..............(((.((((.((..------..)).)))).)))........ ( -17.82) >consensus UUGCCGACCACAAAUACUAUGUCCUUUGGGCUAAGGUUCCUGUCCAAAUUGGGGCAAGUUUCGCCCUCCCUGAAAAAAAUCAAGUGGUCUUAAUUACUAAGCACUC__UGUAAGGUAAUC (((((((((((........((((((((((((..........))))))...))))))..(((((.......)))))........))))))...........((.......))..))))).. (-18.67 = -19.53 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:27 2006