| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,983,644 – 9,983,750 |
| Length | 106 |
| Max. P | 0.638114 |
| Location | 9,983,644 – 9,983,750 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.41 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -16.87 |
| Energy contribution | -20.65 |
| Covariance contribution | 3.78 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9983644 106 - 27905053 GAGUUUAACCUGGAUGUCACACCGCCAGCAGGAACACGUUGGCCGAA--GGCU----AAAGCCAUCCAGAACGUGGUGAACCAUAGCACACAGACUCCGAAGAAAGGGAUAC ((((((...((((((......(.((((((........)))))).)..--(((.----...)))))))))...((((....)))).......))))))............... ( -32.40) >DroSec_CAF1 66127 106 - 1 GAGUUUAACCUGGAUGUCACACCGCCAGCGGGAACACGUUGGCCGAA--GGCU----AAAGCCCUCCAGAACAUGGUGAACCAUGGAACACAGACUCAGAAGAAAGGCAUAC ((((((...(((((.......(.(((((((......))))))).)..--(((.----...))).)))))..(((((....)))))......))))))............... ( -37.60) >DroSim_CAF1 66070 106 - 1 GAGUUUAACCUGGAUGUCACACCGCCAGCGGGAACACGUUGGCCGAA--GGCU----AAAGCCCUCCAGAACAUGGUGAACCAUGGCACACAGACUCAGAAGAAAGGAAUAC ((((((...(((((.......(.(((((((......))))))).)..--(((.----...))).)))))..(((((....)))))......))))))............... ( -37.60) >DroEre_CAF1 70486 106 - 1 GAGUUUAACCUGGAUGUCACGCCGCCAACGGGAACACCUUGGCCGAU--UAGC----AAAGCCCUCCCGAACGUGGUGAGCCAUGGCACACAGACUCAGAGGAAAGGGAAAC ((((.....(((..(((((.(((((((.(((((....(((.((....--..))----.)))...)))))....))))).))..)))))..)))))))............... ( -31.60) >DroYak_CAF1 68892 106 - 1 GAGUUUAACCUGGAUGUUACUCCGCCAACAGGAACACGAUGGCCGAG--GAGU----AAAGCCCUUCGGAACGUGGUGAACCAUGGGACACAGACUCAAAAGAAAGGGAAGC ((((((..((.((...(((((((((((...(.....)..))))...)--))))----))...))...))..(((((....)))))......))))))............... ( -31.30) >DroPer_CAF1 70272 102 - 1 GAGUUCGACUUCAAUGUAACGCCUCCCGCAGGCACCAAGCAGCCGUACAGGCUACCCAAAGCUCGC------AGCGGAAACCGAGGCACACAGAC-CAGUAAAAAGGA---C ..((((.(((....(((...(((((((((.(((........)))((...((((......)))).))------.)))).....)))))..)))...-.))).....)))---) ( -26.90) >consensus GAGUUUAACCUGGAUGUCACACCGCCAGCAGGAACACGUUGGCCGAA__GGCU____AAAGCCCUCCAGAACAUGGUGAACCAUGGCACACAGACUCAGAAGAAAGGGAUAC ((((((...(((((.........((((((........))))))......((((......)))).)))))..(((((....)))))......))))))............... (-16.87 = -20.65 + 3.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:25 2006