Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,979,392 – 9,979,506 |
Length | 114 |
Max. P | 0.946278 |
Location | 9,979,392 – 9,979,506 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.56 |
Mean single sequence MFE | -32.09 |
Consensus MFE | -25.64 |
Energy contribution | -26.52 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.80 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9979392 114 + 27905053 UAAGCUGUAUAUCUUCCCAGCGGAAUACACUCCGCCUGGUGGCUCCGAUUUCCAUACUGAUGUACUGGUUCUUGUAAAAUAUCCAGCAUUGU-----GUCCUU-CGAACACAACUUUCAA ...((((.((((..((((((((((......)))).)))).))....((...((((((....))).))).)).......)))).)))).((((-----((....-...))))))....... ( -27.30) >DroSec_CAF1 61812 120 + 1 UAAGCUGGAUAUCUUCCCAGGGGAAUACACUCUGCCUGGUGGCUCCGAUUUCCAUACUGUUGUACUGGUUCUUGCACAAUAUCCAGCAUACUGUAUUGUCCCGGGGAACAGAACUUUCAA ...(((((((((....((((((((......))).)))))((((...((...((((((....))).))).))..)).)))))))))))...((((....(((...)))))))......... ( -33.30) >DroSim_CAF1 61773 119 + 1 UAAGCUGGAUAUCUUCCCAGGGGAAUACACUCCGCCUGGUGGCUCCGAUUUCCAUACUGUUGUACUGGUUCUUGCACAAUAUCCAGCAUACUGUAAUGUCCUG-GGAACACAACUUUCAA ...(((((((((....((((((((......))).)))))((((...((...((((((....))).))).))..)).)))))))))))..........((..((-....))..))...... ( -34.70) >DroEre_CAF1 66302 114 + 1 UAUGCUGGAUAUUUUCCCAGGGGCACACACUCCGCCUGGUGGCUCCGAUUUCCAUACUGCUGCACUGGUUCUUGCGCAACAUCCAGCAUUGU-----GUCCUU-GGAUUAUAACUUUCAA ..((((((((.........(((((.(((.(.......)))))))))...........(((.(((........))))))..))))))))((((-----(((...-.)).)))))....... ( -30.90) >DroYak_CAF1 64702 108 + 1 UAUGCUGGAUAUCUGCCCAGGGGAAUGCACUCCGCCUGGUGGCUACGAUUUCCAUACUGCUGCACUGGUUCUUGCGCAAUAUCCAGCAUUGU-----GUCCUU-GGAG------UUUUCA .(((((((((((.(((.(((((((......)))(((..(..((...............))..)...))).)))).))))))))))))))...-----.((...-.)).------...... ( -34.26) >consensus UAAGCUGGAUAUCUUCCCAGGGGAAUACACUCCGCCUGGUGGCUCCGAUUUCCAUACUGCUGUACUGGUUCUUGCACAAUAUCCAGCAUUGU_____GUCCUU_GGAACACAACUUUCAA ...(((((((((...(((((((((......))).))))).)((...((...((((((....))).))).))..))...)))))))))................................. (-25.64 = -26.52 + 0.88)
Location | 9,979,392 – 9,979,506 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.56 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -27.40 |
Energy contribution | -27.64 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -2.37 |
Structure conservation index | 0.74 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9979392 114 - 27905053 UUGAAAGUUGUGUUCG-AAGGAC-----ACAAUGCUGGAUAUUUUACAAGAACCAGUACAUCAGUAUGGAAAUCGGAGCCACCAGGCGGAGUGUAUUCCGCUGGGAAGAUAUACAGCUUA ......((((((((..-...)))-----)))))((((.(((((((.......(((.(((....))))))............((.(((((((....))))))).))))))))).))))... ( -35.20) >DroSec_CAF1 61812 120 - 1 UUGAAAGUUCUGUUCCCCGGGACAAUACAGUAUGCUGGAUAUUGUGCAAGAACCAGUACAACAGUAUGGAAAUCGGAGCCACCAGGCAGAGUGUAUUCCCCUGGGAAGAUAUCCAGCUUA ......((..(((((....)))))..)).....((((((((((.((((....(((.(((....))))))........(((....)))....))))((((....))))))))))))))... ( -36.40) >DroSim_CAF1 61773 119 - 1 UUGAAAGUUGUGUUCC-CAGGACAUUACAGUAUGCUGGAUAUUGUGCAAGAACCAGUACAACAGUAUGGAAAUCGGAGCCACCAGGCGGAGUGUAUUCCCCUGGGAAGAUAUCCAGCUUA ......((.(((((..-...))))).)).....(((((((((((.((..((.(((.(((....))))))...))...))).(((((.((((....)))))))))...))))))))))... ( -38.30) >DroEre_CAF1 66302 114 - 1 UUGAAAGUUAUAAUCC-AAGGAC-----ACAAUGCUGGAUGUUGCGCAAGAACCAGUGCAGCAGUAUGGAAAUCGGAGCCACCAGGCGGAGUGUGUGCCCCUGGGAAAAUAUCCAGCAUA ................-......-----...((((((((((((((((........)))))))....(((.........)))(((((.((........)))))))......))))))))). ( -35.30) >DroYak_CAF1 64702 108 - 1 UGAAAA------CUCC-AAGGAC-----ACAAUGCUGGAUAUUGCGCAAGAACCAGUGCAGCAGUAUGGAAAUCGUAGCCACCAGGCGGAGUGCAUUCCCCUGGGCAGAUAUCCAGCAUA ......------....-......-----...((((((((((((((((........)))).((....(((.........)))(((((.((((....))))))))))).)))))))))))). ( -38.70) >consensus UUGAAAGUUGUGUUCC_AAGGAC_____ACAAUGCUGGAUAUUGUGCAAGAACCAGUACAACAGUAUGGAAAUCGGAGCCACCAGGCGGAGUGUAUUCCCCUGGGAAGAUAUCCAGCUUA .................................((((((((((.........(((.(((....))))))............(((((.((((....)))))))))...))))))))))... (-27.40 = -27.64 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:22 2006