Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,979,192 – 9,979,312 |
Length | 120 |
Max. P | 0.834191 |
Location | 9,979,192 – 9,979,312 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -42.16 |
Consensus MFE | -33.70 |
Energy contribution | -33.66 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.80 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9979192 120 - 27905053 AGGUGUACCUCAUCCUGUUGGCCCAACUGAUCACUUCCCUGGUGGUUAUAGUUUCACUUACUGCUGAUAAACGGGUGCGUCUGAUGGUGGCAGAAAGCACCUGGAUAUUUGUGGUGGCCA (((((.....)).)))..(((((.(((((((((((.....)))))))..))))......((..(.((((..(((((((.((((.......))))..)))))))..)))).)..))))))) ( -40.60) >DroSec_CAF1 61612 120 - 1 AGGUGUACCUAAUCCUGUUGGCGCAACUGAUCACUUCCCUGGUGGUUAUAGUUUCGCUUACUGCUGAUAACCGGGUGCGUCUGAUGGUGGCAGACAGCACCUGGAUAUUUUUGGUGGCCA .(((.((((.......((.((((.(((((((((((.....)))))))..)))).)))).))....((((.(((((((((((((.......))))).)))))))).))))...))))))). ( -46.20) >DroSim_CAF1 61579 120 - 1 AGGUGUACCUAAUCCUGUUGGCGCAACUGAUCACUUCCCUGGUGGUUAUAGUUUCUCUUACUGCUGAUAACCGGGUGCGUUUGAUGGUGGCAGACAGCACCUGGAUAUUUUUGGUGGCCA .(((.((((......(((..((.....((((((((.....)))))))).(((.......)))))..))).(((((((((((((.......))))).))))))))........))))))). ( -40.50) >DroEre_CAF1 66102 120 - 1 AGGUGUACCUCAUCCUGUUGGCACAACUGAUCACCUCCCUGGUCGUCAUAGUUGCGCUUACUGUUGAUAGGCAGGUGCGCCUGAUGGUGGCAGACAGCACCUGGAUGUUCCUGGUGGCCA ((((((((((...(((((..(((((((((((.(((.....))).)))..))))).......)))..))))).)))))))))).....((((......((((.((.....)).)))))))) ( -46.51) >DroYak_CAF1 64502 120 - 1 AAGUGUACCUAAUUCUGUUAGCACAACUGAUCACCUCCCUGGUCGUCAUAGUAACCCUUACGGUUGAUGAGCAGGUGCGUCUGAUAGUGGCAGACAGCACCUGGAUCUUUUGGAUGGCCA ..(((...(((((...))))))))................(((((((....(((((.....)))))..((.((((((((((((.......))))).)))))))..)).....))))))). ( -37.00) >consensus AGGUGUACCUAAUCCUGUUGGCACAACUGAUCACUUCCCUGGUGGUUAUAGUUUCGCUUACUGCUGAUAACCGGGUGCGUCUGAUGGUGGCAGACAGCACCUGGAUAUUUUUGGUGGCCA .(((.((((......(((((((.....((((((((.....)))))))).(((.......))))))))))..((((((((((((.......))))).))))))).........))))))). (-33.70 = -33.66 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:20 2006