Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,974,411 – 9,974,526 |
Length | 115 |
Max. P | 0.705624 |
Location | 9,974,411 – 9,974,526 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 73.40 |
Mean single sequence MFE | -38.76 |
Consensus MFE | -20.10 |
Energy contribution | -17.58 |
Covariance contribution | -2.52 |
Combinations/Pair | 1.53 |
Mean z-score | -1.68 |
Structure conservation index | 0.52 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9974411 115 + 27905053 UUCCUUUCAUUGUCCUUUAGGCCAUCGUCUCCGACAAAGCCACCUUUGGGUGGUCUAGGUCUUUUGUCCUUGCCCUCCUGCGGAUUCCAGGGACGGACCAGAGUACCCUUCUUCU .........(((((....((((....))))..)))))..........(((((.(((.(((((...(((((((...(((...)))...))))))))))))))).)))))....... ( -36.40) >DroPse_CAF1 60190 112 + 1 UUGCGCUGGGCGUCGGUUAGGCCAUCGGGUCCGACGACAGGACC---GGUUUGCUUGCCUUUCGGAGCCUUGCCGUCUGCCGGGUUCCAGGGCUUGCUGAGAGCUCCCGACUUUU ..((.....))(((((...(((..((((((((.......)))))---.....((..(((((..(((((((.((.....)).))))))))))))..)))))..))).))))).... ( -45.90) >DroSec_CAF1 56918 115 + 1 UUCCUUUCGCUCUCCUUUAGACCAUCGUCUCCGACAAAGCCACCUUUGGGUGGUCUAGGUCUUUUGUCCUUGCCCUCCUGCGGAUUCCAGGGACGGACCAGUGUACCCUUCUUCU .......((((.(((...(((((...(((...)))...((((((....))))))...)))))...(((((((...(((...)))...))))))))))..))))............ ( -34.50) >DroEre_CAF1 61138 115 + 1 UUCCUUUCAUGGUCUUUUAGACCAUCGGCGCCGACAAAUCCACCUUUGGGUCGUUUAGGUCUCUUGUCCUUGCCCUCCUGCGGAUUCCAGGGGCGGACGAGAGUGCCCUUCUUCU ........((((((.....)))))).(((((.(((....(.(((....))).).....)))((((((((..((((..(((.(....)))))))))))))))))))))........ ( -40.00) >DroYak_CAF1 59630 115 + 1 UUCCUUUCACUGUCUUUCAGGCCAUCGGCUCCGACAAAUCCUCCCUUGGGUCUCUUAGGUCUCUUGUCUUUGCCCUCCUGCGGAUUCCAGGGACGGACGAGAGUGCCCUUCUUCU ...(((((..((((.....((((...))))..))))..((((((((.((((((..((((.................)))).)))))).))))).))).)))))............ ( -29.83) >DroPer_CAF1 60733 112 + 1 UUGCGCUGGGCGUCGGUUAGGCCAUCGGGUCCGACGACAGGACC---GGUUUGCUUGCCUUUCGGAGCCUUGCCGUCUGCCGGGUUCCAGGGCUUGCUGAGAGCUCCCGACUUUU ..((.....))(((((...(((..((((((((.......)))))---.....((..(((((..(((((((.((.....)).))))))))))))..)))))..))).))))).... ( -45.90) >consensus UUCCUUUCACUGUCCUUUAGGCCAUCGGCUCCGACAAAACCACCUUUGGGUCGCUUAGGUCUCUUGUCCUUGCCCUCCUGCGGAUUCCAGGGACGGACGAGAGUACCCUUCUUCU ..............(((.((((..(((....)))......((((....)))))))))))(((((((((((((...(((...)))...)))))))))..))))............. (-20.10 = -17.58 + -2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:09 2006