Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,961,132 – 9,961,236 |
Length | 104 |
Max. P | 0.889420 |
Location | 9,961,132 – 9,961,236 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -18.47 |
Energy contribution | -18.30 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.04 |
Mean z-score | -2.70 |
Structure conservation index | 0.74 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9961132 104 - 27905053 GAAUAAAAGUGCUCCGCUC--AAGUGGCGCACGCAAAAUAACUUAAAAGCCGCAAAGUGGCUGGCAAAAACUAUUUAAGUUUAUGCGAUAACAACAAUAAAGGGA--C ........((((.((((..--..)))).))))(((....((((((((((((((...))))))((......)).))))))))..)))...................--. ( -27.60) >DroVir_CAF1 57601 99 - 1 GAGUAGG-------GACUUAAGAGUGCUGCACGCAAAAUAACUUAAAAGCCGCAAAGUGGCUGGUAAAAACUAUUUAAGUUUAUGCGAUAAGGACAAUAAAAGCA--C ((((...-------.))))....((.((...((((....((((((((((((((...))))))(((....))).))))))))..))))...)).))..........--. ( -22.90) >DroPse_CAF1 42560 106 - 1 AAAUAAAAGUGCUUCACUC--AAGUGGUGCACGCAAAAUAACUUAAAAGCCGCAAAGUGGCUGGCAAAAACUAUUUAAGUUUAUGCGAUAACAACAGUUAAGAGGGCC ........((((.((((..--..)))).))))((....(((((....((((((...)))))).(((.(((((.....))))).))).........))))).....)). ( -28.20) >DroGri_CAF1 50517 100 - 1 GUGUAAG------CGACUUAAGAGUGCUGAACGCAAAAUAACUUAAAAGCCGCAAAGUGGCUGGCAAAAACUAUUUAAGUUUAUGCGAUAAGAACAAUAAAAGUA--C ((((.((------(.(((....))))))..)))).......((((..((((((...)))))).(((.(((((.....))))).)))..)))).............--. ( -24.20) >DroMoj_CAF1 53563 100 - 1 GAGUAGG------CGACUUGAGAGUGCUGCACGCAAAAUAACUUAAAAACCGCAAAGUGGCUGGUAAAAACUAUUUAAGUUUAUGCGAUAAGGACAAUAAAAGCA--G ((((...------..))))....((.((...((((....((((((((..((((...)))).((((....))))))))))))..))))...)).))..........--. ( -18.60) >DroPer_CAF1 43330 106 - 1 AAAUAAAAGUGCUUCACUC--AAGUGGUGCACGCAAAAUAACUUAAAAGCCGCAAAGUGGCUGGCAAAAACUAUUUAAGUUUAUGCGAUAACAACAGUUAAGAGGGCC ........((((.((((..--..)))).))))((....(((((....((((((...)))))).(((.(((((.....))))).))).........))))).....)). ( -28.20) >consensus GAAUAAA______CCACUC__AAGUGCUGCACGCAAAAUAACUUAAAAGCCGCAAAGUGGCUGGCAAAAACUAUUUAAGUUUAUGCGAUAACAACAAUAAAAGGA__C .......................((.((...((((....((((((((((((((...))))))((......)).))))))))..))))...)).))............. (-18.47 = -18.30 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:04 2006