Locus 3671

Sequence ID 3R_DroMel_CAF1
Location 9,947,216 – 9,947,314
Length 98
Max. P 0.513707
window5894

overview

Window 4

Location 9,947,216 – 9,947,314
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 95.90
Mean single sequence MFE -12.53
Consensus MFE -12.17
Energy contribution -12.50
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.97
SVM decision value -0.04
SVM RNA-class probability 0.513707
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9947216 98 + 27905053
AAAAAUAAUUAAUACAAAUAAAGUGAAUUGAAAAAACUAAAUAGUUAUGUAGGAAAAGAAUGAAGAAAGAGACGUUCAGUCUUAUCAGCACGUCUGAC
......................(((...(((...((((....))))...(((((...(((((..........)))))..)))))))).)))....... ( -10.50)
>DroSec_CAF1 29819 97 + 1
AAAAAUAAUUAAUACAAAUAAAGUGAAUCGAAAAAACUAAAUAGUUAUAUACGAUAAGAAUGAAGAAAGAGACAUUCAGUCUUAUCAGCACGUCUGA-
......................(((.........((((....))))......(((((((.((((..........)))).)))))))..)))......- ( -14.00)
>DroSim_CAF1 30018 97 + 1
AAAAAUAAUUAAUACAAAUAAAGUGAAUCGAAAAAACUAAAUAGUUAUAUACGAUAAGAAUGAAGAAAGAGACGUUCAGUCUUAUCAGCACGUCUGA-
......................(((.........((((....))))......(((((((.((((..........)))).)))))))..)))......- ( -13.10)
>consensus
AAAAAUAAUUAAUACAAAUAAAGUGAAUCGAAAAAACUAAAUAGUUAUAUACGAUAAGAAUGAAGAAAGAGACGUUCAGUCUUAUCAGCACGUCUGA_
......................(((.........((((....))))......(((((((.((((..........)))).)))))))..)))....... (-12.17 = -12.50 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:01 2006