Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,946,733 – 9,946,844 |
Length | 111 |
Max. P | 0.907466 |
Location | 9,946,733 – 9,946,844 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -43.00 |
Consensus MFE | -17.77 |
Energy contribution | -18.33 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.46 |
Mean z-score | -2.38 |
Structure conservation index | 0.41 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.605207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9946733 111 + 27905053 UGGUGGUGGUAGUCAUCGUUGAAGAAGCCGUCGACAUU---CGCUUUGGAUGCCCAAUAGGAUAGUUGGGAGCGUAGUGCGAUGGCACCUGUGGUGGAUUGACCACAGGCGGAG (..(((((.....)))))..).....(((((((.((((---((((((.(((.((.....))...))).)))))).))))))))))).((((((((......))))))))..... ( -45.80) >DroVir_CAF1 42019 105 + 1 UGGUAGUGGUUGU------GGACGAGGCCGUGGACAUG---CGCUUGGGAUGUCCGAUUGGAUAGUUGGGCGCAUAAUGCGAAGGUACCUGCGGUGGAUUGACCACAGGCGGCG .....((.(((((------((.(((.((((..(..(((---((((..(..(((((....))))).)..)))))))..(((....))).)..))))...))).))))).)).)). ( -44.20) >DroGri_CAF1 35116 108 + 1 UGGUAUUGGUGGU---GGUGGACGAGGCCGUCGACAUA---CGCUUGGGAUGCCCAAUGGGAUAGUUGGGCGCAUAGUGCGACGGCACCUGGGGCGGAUUAACCACCGGUGGUG .(.((((((((((---.((.((((....)))).))...---(((((.((..(((((((......))))))).....((((....)))))).))))).....)))))))))).). ( -47.60) >DroWil_CAF1 31957 108 + 1 UUGUGGUGGUGGU------AGACGAAGCCGUCGACAUGGGACGUUUGGGAUGUCCCAUGGGAUAAUUUGGAGCAUAAUGCGAAGGCACCUGAGGCGGAUUGACCACCGGUGGCG ....(.(((((((------.((((....))))..(((((((((((...)))))))))))...(((((((...((...(((....)))..))...)))))))))))))).).... ( -40.20) >DroMoj_CAF1 38175 108 + 1 UGGUGGUGGUUGU---GGUGGACGAGGCCGUUGACAUG---CGCUUGGGAUGUCCAAUUGGAUAGUUGGGAGCAUAGUGUGAGGGCACUUGCGGUGGAUUUACCACUGGAGGCG .((((((((...(---..(.(.(((((((.((((((((---(.((..(..(((((....))))).)..)).)))).)).))).))).))))).)..)..))))))))....... ( -36.50) >DroAna_CAF1 35440 108 + 1 UUCCGGCCACUGUGCC---CGACGAAGCUGUGGACAUA---CGCUUGGGAUGCCCAAUUGGAUAGUUUGGUGCAUAAUGCGAGGGCACCUGCGGUGGAUUGACCACCGGCGGAG .((((.((...(((((---(..(.((((.(((....))---))))).).((((((((.........)))).)))).......))))))....(((((.....))))))))))). ( -43.70) >consensus UGGUGGUGGUUGU______GGACGAAGCCGUCGACAUG___CGCUUGGGAUGCCCAAUUGGAUAGUUGGGAGCAUAAUGCGAAGGCACCUGCGGUGGAUUGACCACCGGCGGCG ..........................((((((..............((((((((((((......)))))..))))..(((....))))))..(((((.....))))))))))). (-17.77 = -18.33 + 0.56)
Location | 9,946,733 – 9,946,844 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -12.82 |
Energy contribution | -13.27 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -2.92 |
Structure conservation index | 0.40 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9946733 111 - 27905053 CUCCGCCUGUGGUCAAUCCACCACAGGUGCCAUCGCACUACGCUCCCAACUAUCCUAUUGGGCAUCCAAAGCG---AAUGUCGACGGCUUCUUCAACGAUGACUACCACCACCA ....(((((((((......)))))))))(((.(((.((..(((((((((........))))).......))))---...))))).))).......................... ( -32.71) >DroVir_CAF1 42019 105 - 1 CGCCGCCUGUGGUCAAUCCACCGCAGGUACCUUCGCAUUAUGCGCCCAACUAUCCAAUCGGACAUCCCAAGCG---CAUGUCCACGGCCUCGUCC------ACAACCACUACCA .((((((((((((......)))))))))..........(((((((.......(((....)))........)))---)))).....))).......------............. ( -30.96) >DroGri_CAF1 35116 108 - 1 CACCACCGGUGGUUAAUCCGCCCCAGGUGCCGUCGCACUAUGCGCCCAACUAUCCCAUUGGGCAUCCCAAGCG---UAUGUCGACGGCCUCGUCCACC---ACCACCAAUACCA .......((((((....((......)).(((((((.(((((((((((((........)))))).......)))---)).))))))))).......)))---))).......... ( -37.61) >DroWil_CAF1 31957 108 - 1 CGCCACCGGUGGUCAAUCCGCCUCAGGUGCCUUCGCAUUAUGCUCCAAAUUAUCCCAUGGGACAUCCCAAACGUCCCAUGUCGACGGCUUCGUCU------ACCACCACCACAA .......((((((..((..(((((.(((((....)))))................((((((((.........))))))))..)).)))...))..------))))))....... ( -32.00) >DroMoj_CAF1 38175 108 - 1 CGCCUCCAGUGGUAAAUCCACCGCAAGUGCCCUCACACUAUGCUCCCAACUAUCCAAUUGGACAUCCCAAGCG---CAUGUCAACGGCCUCGUCCACC---ACAACCACCACCA ........(((((.........(((((((......)))).)))................((((......((.(---(.((....)))))).)))))))---))........... ( -19.00) >DroAna_CAF1 35440 108 - 1 CUCCGCCGGUGGUCAAUCCACCGCAGGUGCCCUCGCAUUAUGCACCAAACUAUCCAAUUGGGCAUCCCAAGCG---UAUGUCCACAGCUUCGUCG---GGCACAGUGGCCGGAA .(((((((((((.....)))))....((((((..((.....))...............(((((((.(.....)---.)))))))..........)---)))))...)).)))). ( -38.80) >consensus CGCCGCCGGUGGUCAAUCCACCGCAGGUGCCCUCGCACUAUGCUCCCAACUAUCCAAUUGGACAUCCCAAGCG___CAUGUCGACGGCCUCGUCC______ACAACCACCACCA ....(((.(((((......))))).)))(((...((.....)).................(((((............)))))...))).......................... (-12.82 = -13.27 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:00 2006