Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,938,615 – 9,938,710 |
Length | 95 |
Max. P | 0.790589 |
Location | 9,938,615 – 9,938,710 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 74.57 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -21.01 |
Energy contribution | -20.52 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.38 |
Mean z-score | -1.19 |
Structure conservation index | 0.69 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9938615 95 + 27905053 UCCCAAAAUGA--AUCCUUACCCCGCAGUAUAGAUGGGCGGUAGUUUCCGUUCAUAGUUGCUGGUGCUGGGUGUUACCACGCCAGCAUGUAUCUCCU ...........--............(((((...((((((((......))))))))...)))))((((((((((....))).)))))))......... ( -31.30) >DroPse_CAF1 20024 91 + 1 ----GGAUUGG--CCUGUUACCCCGCUGUAUAGAUGGGCGGCAGCUUCUUCUCGUAGCUGCUGGUGCUAGGCGUGACGACGCCCGCAUGGAUUUCCU ----(((....--((......((((((....)).))))((((((((.(.....).))))))))((((..(((((....))))).))))))...))). ( -33.10) >DroGri_CAF1 24469 90 + 1 -----AUAG--GGUGGGUUACCCAGCUGUGUAGAUGGGCGGCAGCUUCUUCUCAUAGUUGCCCGUGCUUGGUGUGACAACGCCGGCAUGAAUCUCCU -----...(--((((((...)))(((((((.(((.((((....))))..))))))))))))))(((((.(((((....))))))))))......... ( -34.80) >DroWil_CAF1 22891 89 + 1 ------AUCGU--UCUCCUACCCAGCUGUGUAAAUGGGUGGCAGCUUCUUUUCAUAGCUACUGGUACUGGGUGUAACCACACCGGCAUGAAUUUCCU ------...((--((.((((((.(((((((.(((..(((....)))..))).)))))))...))))...(((((....)))))))...))))..... ( -24.40) >DroYak_CAF1 23741 87 + 1 UACCAAA----------UUACCCCGCUGUAUAGAUGGGCGGUAGUUUCCGUUCGUAGCUGCUGGUGCUGGGUGUGACCACGCCAGCAUGUAUCUCCU .......----------................((((((((......)))))))).((((((((((.(((......))))))))))).))....... ( -28.70) >DroPer_CAF1 19972 91 + 1 ----CGAUUGG--CCUGUUACCCCGCUGUGUAGAUGGGCGGCAGCUUCUUCUCGUAGCUGCUGGUGCUAGGCGUUACGACGCCCGCAUGGAUUUCCU ----......(--((((((((........)).)))))))(((((((.(.....).))))))).((((..(((((....))))).))))((....)). ( -30.10) >consensus _____AAUUG___CCUGUUACCCCGCUGUAUAGAUGGGCGGCAGCUUCUUCUCAUAGCUGCUGGUGCUGGGUGUGACCACGCCAGCAUGAAUCUCCU ....................(((............)))((((((((.........))))))))(((((.(((((....))))))))))......... (-21.01 = -20.52 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:57 2006