Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,934,084 – 9,934,181 |
Length | 97 |
Max. P | 0.721585 |
Location | 9,934,084 – 9,934,181 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.26 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -12.51 |
Energy contribution | -12.41 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.37 |
Mean z-score | -1.68 |
Structure conservation index | 0.56 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9934084 97 + 27905053 UC-----------ACAGCUGUGUAUCUGUAUUUAAUGACGAAAACCGCUCGUCCAGGGCCGCAGAUAAAUUUCCAGAUACUUUUCACAUGCAGAUACUUCUGCGUAUU ..-----------........(((((((.(((((.((.((......((((.....))))))))..)))))...))))))).......(((((((....)))))))... ( -23.50) >DroSec_CAF1 16827 97 + 1 UC-----------ACAGCUGUGUAUCUGUAUUUAAUGACGAAAACCGCUCGUCAAGGGCCGCAGAUAAAUUUCCAGAUACUUUUCACACGCAGAUACUUCUGCGUAUU .(-----------((....)))(((((((..((..((((((.......))))))..))..)))))))....................(((((((....)))))))... ( -26.20) >DroSim_CAF1 17070 97 + 1 UC-----------ACAGCUGUGUAUCUGUAUUUAAUGACGAAAACCGCUCGUCAAGGGCCGCAGAUAAAUUUCCAGAUACUUUUCACAUGCAGAUACUUCUGCGUAUU .(-----------((....)))(((((((..((..((((((.......))))))..))..)))))))....................(((((((....)))))))... ( -24.40) >DroEre_CAF1 17438 88 + 1 UC-----------ACAGCUGUGUAUCUGUA---AAUGACGAAAACCGCUCGUCCAGGGCCGCAGAUACAUUUCCAGAUACUUCUCACAUACAGAUACAGAUA------ ..-----------.....(.((((((((((---..(((.(((....((((.....))))....((......)).......))))))..)))))))))).)..------ ( -20.60) >DroWil_CAF1 21668 92 + 1 UCUGAGUGAGCGCACAGCUGUGUAUCU------AAUAAUGAAAUCCAUUUGGUCA--GCGGCAGAUACAUUUGUCGGUAUUAAUGUU-GUUAGAUAAUU-------UU ........(((.....)))...(((((------((((((.....((....))...--.(((((((....)))))))........)))-))))))))...-------.. ( -19.60) >DroYak_CAF1 17510 90 + 1 UC-----------ACAGCUGUGUAUCUGUA---AAUGACGAAAACCGCUCGUCCAGGGCCGCAGAUACAUUUCCAGAUACUUUUCACAUACAGAUACAGAUACA---- ..-----------.....(.((((((((((---..(((........((((.....))))....((......))..........)))..)))))))))).)....---- ( -18.80) >consensus UC___________ACAGCUGUGUAUCUGUA___AAUGACGAAAACCGCUCGUCCAGGGCCGCAGAUAAAUUUCCAGAUACUUUUCACAUGCAGAUACUUCUGCG__UU .................((((((((((((.......(((((.......))))).......)))))))........((......))...)))))............... (-12.51 = -12.41 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:56 2006