Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,932,940 – 9,933,046 |
Length | 106 |
Max. P | 0.880275 |
Location | 9,932,940 – 9,933,046 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -24.08 |
Energy contribution | -26.22 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 0.68 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9932940 106 + 27905053 ACCAUCCGCAAUUGCAGCAGGUCAUUGUACGAAAGGUAGGACAUGAUCUCUAGCCACAUCUCGUUAGGCAGCAGUUCGAUGGCGGCUUUGGAGGAACCCUCCUUAU------------- .(((((.(.((((((.(((((((((.((.(....).....)))))))))(((((........))))))).)))))))))))).......(((((...)))))....------------- ( -32.70) >DroPse_CAF1 15267 101 + 1 ACCAUCCGCAGCUGCUUAAGAUCGUUGUAGGUCAGAUAGGACAUCACCUCCAGCCACAUCUCGUUGGGCAGCAUAUCGAUGGGAACUUUUUUC-----UUCCGCAC------------- .(((((....((((((((((((.((((.((((..(((.....))))))).))))...))))...)))))))).....)))))...........-----........------------- ( -27.00) >DroSec_CAF1 15651 106 + 1 ACCAUGCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGACCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUGGAGGAACACUCCUUAU------------- .((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........)))))))))))))))))))).......((((.....))))....------------- ( -41.60) >DroSim_CAF1 15917 106 + 1 ACCAUGCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGAUCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUGGAGGAACACUCCUUAU------------- .((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........)))))))))))))))))))).......((((.....))))....------------- ( -39.00) >DroEre_CAF1 16279 119 + 1 ACCAUGCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGAUCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUUGGGUGACCCUCUAUAUCCUUAUCCUUAUC .((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........))))))))))))))))))))........((....))..................... ( -37.10) >DroPer_CAF1 15242 101 + 1 ACCAUCCGCAGCUGCUUGAGAUCGUUGUAGGUCAGAUAGGACAUGACCUCCAGCCACAUCUCGUUGGGCAGCAUAUCGAUGGGAACUUUUUUC-----UUCCUCAC------------- .(((((....((((((((((((.((((.((((((.........)))))).))))...))))))...)))))).....)))))...........-----........------------- ( -33.60) >consensus ACCAUCCGCAAUUGCUGCAGGUCGUUGUACGAAAGGUAGGACAUGACCUCCAGCCACAUCUCGUUGGGCAGCAGUUCGAUGGCAGCUUUGGAGGAAC_CUCCUUAU_____________ .((((.((.(((((((((((((((((.(((.....))).)))..)))))(((((........))))))))))))))))))))..................................... (-24.08 = -26.22 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:55 2006