Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,926,976 – 9,927,096 |
Length | 120 |
Max. P | 0.732962 |
Location | 9,926,976 – 9,927,096 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -31.30 |
Consensus MFE | -30.37 |
Energy contribution | -30.70 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.97 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9926976 120 - 27905053 CAUCCCCACGUCACUGACUUUUACCGCCCCCCCCUCCCCUUUAGUGGCCGUGGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC .....((((((((((((.......................))))))).))))).((((.((....((...((((((((..........))))))))...))..))))))........... ( -32.50) >DroSec_CAF1 9660 117 - 1 CAUCCCCACGUCACUGACUUUUCCCGCCCCUCC---CCCUUUAGUGGCCGUUGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC .........((((((((................---....))))))))(((...((((.((....((...((((((((..........))))))))...))..)))))).)))....... ( -28.75) >DroSim_CAF1 9998 117 - 1 CAUCCCCACGUCACUGACUUUUCCCGCCCCUCU---CCCUUUAGUGGCCGUGGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC .....((((((((((((................---....))))))).))))).((((.((....((...((((((((..........))))))))...))..))))))........... ( -32.65) >consensus CAUCCCCACGUCACUGACUUUUCCCGCCCCUCC___CCCUUUAGUGGCCGUGGUGGUGUGCUUCUUCCUCUGCUGGGCCCCCUUCCACGCCCAGCGACUGAUUGCCAUCUACGCCCCUGC .....((((((((((((.......................))))))).))))).((((.((....((...((((((((..........))))))))...))..))))))........... (-30.37 = -30.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:54 2006