Locus 3664

Sequence ID 3R_DroMel_CAF1
Location 9,920,284 – 9,920,377
Length 93
Max. P 0.665300
window5886

overview

Window 6

Location 9,920,284 – 9,920,377
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.41
Mean single sequence MFE -24.27
Consensus MFE -17.15
Energy contribution -17.73
Covariance contribution 0.59
Combinations/Pair 1.16
Mean z-score -1.39
Structure conservation index 0.71
SVM decision value 0.28
SVM RNA-class probability 0.665300
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9920284 93 + 27905053
GGGGUCGCCGCAUCGAAGGGCUGUCAUUAAACGAGCUAUCCCCCCACCCCAUUUUAA---UGGCCCUCUUCAGCGGAAUCCCAC-ACCCAUUCCAUG
(((((..((((...((((((..(((((((((.....................)))))---)))).)))))).)))).)))))..-............ ( -26.10)
>DroSec_CAF1 2733 90 + 1
GGGGUCGACGCAUCGAAGGGCUGUCAUUAAACGAGUU---CCCAGCCCCCAUUUUAA---UGGCCCUCUUCAAUGGAAUUCCAC-ACCCAUGCCAUG
((((((((....)))).(((...((.......))...---)))...))))......(---((((.........(((....))).-......))))). ( -21.49)
>DroSim_CAF1 2704 90 + 1
GGGGUCGCCGCAUCGAAGGGCUGUCAUUAAACGAGUU---CCCAGCCCCCAUUUUAA---UGGCCCUCUUCAGCGGAAUUCCAC-ACCCAUGCCAUG
(((((..((((...((((((..(((((((((.(.((.---....)).)....)))))---)))).)))))).))))......))-.)))........ ( -23.70)
>DroEre_CAF1 3027 86 + 1
GGGGUCGCCGCAUCGAAGGGCUGUCAUUAAACGC-UU---UC---CCCCCAUUUUAA---UGGCCCUCUUCAGCGGAAUCCCAC-ACCCUUUCCACA
(((((..((((...((((((..(((((((((...-..---..---.......)))))---)))).)))))).)))).)))))..-............ ( -26.54)
>DroYak_CAF1 3071 87 + 1
GGGGUCGCCGCAUCGAAGGGCUGUCAUUAAACGAGUU---UC---ACCCCAUUUUAA---UGGCCCUCUUCAGCGGAAUCCCAC-ACCCAAUCCACA
(((((..((((...((((((..(((((((((......---..---.......)))))---)))).)))))).)))).)))))..-............ ( -26.46)
>DroPer_CAF1 2653 81 + 1
-GGGGCGCCGCAUCGAAGGGCUGUCAUUAAACGAA---------GGCUCCGUU-UAACAGCCGCCCACUUCUGU---AACCCACCAUCGAA--CAUC
-.(((((((........))(((((...((((((..---------.....))))-))))))))))))........---..............--.... ( -21.30)
>consensus
GGGGUCGCCGCAUCGAAGGGCUGUCAUUAAACGAGUU___CC__GCCCCCAUUUUAA___UGGCCCUCUUCAGCGGAAUCCCAC_ACCCAUUCCAUG
.(((...((((.....(((((((...(((((.....................)))))...))))))).....))))...)))............... (-17.15 = -17.73 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:53 2006