Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,908,925 – 9,909,018 |
Length | 93 |
Max. P | 0.965824 |
Location | 9,908,925 – 9,909,018 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 69.74 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -13.31 |
Energy contribution | -14.20 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.25 |
Mean z-score | -2.24 |
Structure conservation index | 0.40 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9908925 93 - 27905053 GUUUAACACGCUUGAUUUGAGCCGCAACCCACACCGCC-----CACCUG----------CCCACUUGGCCACUUGGCCACUUGGCCCUCAGGUGGGUUG--AGUGGGGAA .........((((.....)))).....(((((.(.(((-----((((((----------.(((..(((((....)))))..)))....))))))))).)--.)))))... ( -43.30) >DroPse_CAF1 134409 103 - 1 GUUUAACGCGCUUGAUUUGAGCUGCA-CCCACACCACAUAGCCAGCCAGCCGAACCACCCCCACA--ACC----ACCCACUCCACCUCCAGGUGGGCGGGCAGUGACCAA .......((((((.....)))).)).-.......(((...((......))...............--...----.(((.(.(((((....)))))).)))..)))..... ( -23.30) >DroSec_CAF1 112050 76 - 1 GUUUAACACGCUUGAUUUGAGCCGCA-CCCACACUGCC-----CACCU--------------------------GGCCACUUGGCUCCCAGGUGGGUUG--AGUGGGGAA .........((((.....))))....-(((((.(.(((-----(((((--------------------------((((....)))...))))))))).)--.)))))... ( -34.80) >DroSim_CAF1 115948 76 - 1 GUUUAACACGCUUGAUUUGAGCCGCA-CCCACACCGCC-----CACCU--------------------------GGCCACUUGGCCCUCAGGUGGGUUG--AGUGGGGAA .........((((.....))))....-(((((.(.(((-----(((((--------------------------((((....))))...)))))))).)--.)))))... ( -35.50) >DroEre_CAF1 113128 103 - 1 GUUUAACACGCUUGAUUUGAGCCGCA-CCCACACCGCUAGCACCGCCAGC---ACCGCCCCCACAUGGCCACUUGGCCACUUGGCCCUCAGGUGGGUUC--AGUCGGGA- ..........(((((((.(((((.((-((......(((.((...)).)))---.......(((..(((((....)))))..)))......)))))))))--))))))).- ( -36.60) >DroYak_CAF1 116132 84 - 1 GUUUAACACGCUUGAUUUGAGUCGCA-CCCACACCGCU-----------------------CACCUGGUCACCUGGCCACUUGGCCCUAAGGUGGGUUG--AGUCGGGAA ........(((((.....))).))..-(((((.(.(((-----------------------(((((((...)).((((....))))...)))))))).)--.)).))).. ( -26.10) >consensus GUUUAACACGCUUGAUUUGAGCCGCA_CCCACACCGCC_____CACCU_____________CAC___GCC____GGCCACUUGGCCCUCAGGUGGGUUG__AGUGGGGAA .........((((.....)))).....(((((..........................................((((....))))(((....)))......)))))... (-13.31 = -14.20 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:47 2006