Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,908,553 – 9,908,643 |
Length | 90 |
Max. P | 0.597503 |
Location | 9,908,553 – 9,908,643 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 85.52 |
Mean single sequence MFE | -24.01 |
Consensus MFE | -19.09 |
Energy contribution | -19.53 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.80 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9908553 90 - 27905053 CUGGCCUGCCAAGGUAGCAAAGUGGC-UCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC- ...((((....))))......((((.-.(((((.((..(((((((((((((......))))))...)))))))..)).)))))..))))..- ( -28.90) >DroPse_CAF1 134001 81 - 1 C----GU-------UCGAAAAGUGGCCUCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCUAUAAUUUGAGUGAGCUCCUCACU .----..-------......(((((...(((((.((..(((((((((((((......))))))...)))))))..)).)))))....))))) ( -18.60) >DroSec_CAF1 111681 90 - 1 CUGGCCUGCCAAGGUAGCAGAGUGGC-UCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC- (((((((....))))..))).((((.-.(((((.((..(((((((((((((......))))))...)))))))..)).)))))..))))..- ( -30.30) >DroYak_CAF1 115751 90 - 1 CUGGCCUGCCAAGGUAGCAAAGUGGC-UCUUGCAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC- ...((((....))))......((((.-.((..(.((..(((((((((((((......))))))...)))))))..)).)..))..))))..- ( -28.30) >DroAna_CAF1 112239 90 - 1 UCGUCCUGCCAAGGUAGCAAAGUGGCCUCUUACAUAUUUCAUGGCUUAGGUAAAUUGACUUAAUUUGCUAUAAUUUGAGUU-GCUCCGCCA- ............((((((((...((((...............))))..(((((((((...)))))))))..........))-)))..))).- ( -16.66) >DroPer_CAF1 135721 88 - 1 C----GUUCGACGUUCGAAAAGUGGCCUCUUACAUAUUUUAUGGCUUAGGUAAAUGGACUUAAUUUGCUAUAAUUUGAGUGAGCUCCUCACU .----.((((.....)))).(((((...(((((.((..(((((((((((((......))))))...)))))))..)).)))))....))))) ( -21.30) >consensus CUGGCCUGCCAAGGUAGCAAAGUGGC_UCUUACAUAUUUUAUGGCUUAGGUAAAUUGACUUAAUUUGCCAUAAUUUGAGUGAGCUCCGCGC_ .....................((((...(((((.((..(((((((((((((......))))))...)))))))..)).)))))..))))... (-19.09 = -19.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:46 2006