Locus 366

Sequence ID 3R_DroMel_CAF1
Location 1,411,786 – 1,411,905
Length 119
Max. P 0.728723
window609

overview

Window 9

Location 1,411,786 – 1,411,905
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.63
Mean single sequence MFE -43.57
Consensus MFE -29.02
Energy contribution -29.83
Covariance contribution 0.81
Combinations/Pair 1.27
Mean z-score -2.27
Structure conservation index 0.67
SVM decision value 0.42
SVM RNA-class probability 0.728723
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1411786 119 - 27905053
CAUUGGAAGCAUUGGAGCACCGCGCAUCCGUAAAGCCUUGCUCCAAGGCAAGGCGCGCAUAGCAGCGCCGCCCACAGCUCCGACUUCAGCUCCCGCUGCAGACAUACUGUCUAGCAUUU
.....((((..(((((((...(((..........((((((((....))))))))((((......))))))).....)))))))))))(((....)))((((((.....)))).)).... ( -44.60)
>DroSec_CAF1 12550 119 - 1
CAUUGGUAGCAUUGGAGCACCGCGCAUCCGUAAAGCCUUGCUCCAAGGCAAGGCGCGCAUAGCAGCGCCGCCCUCAGCUCCGUCUUCAGCUCCCACUGCAGACAUACUGUCUAGCAUUU
...(((.(((..((((((...(((..........((((((((....))))))))((((......))))))).....))))))......))).))).(((((((.....)))).)))... ( -44.00)
>DroSim_CAF1 12723 119 - 1
CAUUGGUAGCAUUGGAGCACCGCGCAUCCGUAAAGCCUUGCUCCAAGGCAAGGCGCGCAUAGCAGCGCCGCCCUCAGCUCCGUCUUCAGCUCCCACUGCAGACAUACUGUCUAGCAUUU
...(((.(((..((((((...(((..........((((((((....))))))))((((......))))))).....))))))......))).))).(((((((.....)))).)))... ( -44.00)
>DroEre_CAF1 16477 119 - 1
CAUUGCUAGUGUUGGAGCACCGCGAAUCCGAAAAGCCUUGCUGCAAGGCAAGGCACGCAUAGCAGCGCCGCCCUCAGCUCCGACUUCAGCUACCGCUGGAGACAUACUGUCUACCAUUU
....(((...((((((((...(((..........((((((((....)))))))).(((......))).))).....))))))))...)))......(((((((.....)))).)))... ( -44.40)
>DroYak_CAF1 11918 119 - 1
GAUUGCUAGUAUUGGAGCACCGCGAAUCCGAACGGCGUUGCUCCAGGGCAAGGCGCGCAUAGCAGCUCCAUCCUUAGGUCCCACUGCAGCUGCCGCUGGAGACAUACUGUCCACCAUUA
............(((((((.(((...........))).)))))))(((((.((((.(((..((((..((.......)).....))))...)))))))(....)....)))))....... ( -38.10)
>DroAna_CAF1 10435 119 - 1
UAUAGCCAGCAUUGGCGCCCCGCGCAGCCGGAAGGCUCUGCUCCAGAGCAAGGCCCGCACGGCCGCCACGACCUCAUCGUCCAGCACAGCUGCAGCUGGCGACAUACUUUCCAGUAUUU
....((((((..(((((..(((.((.(((.....((((((...))))))..)))..)).))).))))).(((......)))((((...))))..))))))...(((((....))))).. ( -46.30)
>consensus
CAUUGCUAGCAUUGGAGCACCGCGCAUCCGUAAAGCCUUGCUCCAAGGCAAGGCGCGCAUAGCAGCGCCGCCCUCAGCUCCGACUUCAGCUCCCGCUGCAGACAUACUGUCUAGCAUUU
....((.(((..((((((................((((((((....))))))))((((......))))........))))))......)))))...(((((((.....)))).)))... (-29.02 = -29.83 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:29 2006