Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,907,007 – 9,907,113 |
Length | 106 |
Max. P | 0.565437 |
Location | 9,907,007 – 9,907,113 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -25.63 |
Consensus MFE | -17.16 |
Energy contribution | -16.47 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.26 |
Mean z-score | -1.07 |
Structure conservation index | 0.67 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9907007 106 + 27905053 U----GUAUCGAUG--------CGAUAUGU-UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAAUAACGAGGCGCAGCCGAUAGACGAAUUUAAUCUGGA .----((((((...--------)))))).(-(((((.....(((((((((((((((..((((......)))))))))).........))))))))).((.....))......)))))). ( -28.60) >DroVir_CAF1 127743 93 + 1 ---------CGCUG--------C---UUGAACAGAUAAUAACUGCGCCUCUACUUUGAUAGGGCAAUGCCUGGAGGCGCUCAACAGCGA------GCAAAUUGACGAAUUUAAUCUGGA ---------(((((--------.---((((..((.......))(((((((((((.....))(((...))))))))))))))))))))).------.((.(((((.....))))).)).. ( -27.40) >DroGri_CAF1 118898 93 + 1 ---------UGCUG--------C---CUGAGCAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGCGCUCAACAGUGA------GCAAAUUGACGAAUUUAACUUGGA ---------((((.--------.---(((.((((.......))))(((((((..(((......)))....)))))))......)))..)------)))..................... ( -24.30) >DroWil_CAF1 138330 95 + 1 ------------------------AUUUGCUUAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGUCUGGAGGUGCUUAACAAUGAGGCGCAACCAAUUGACGAAUUUAAUUUGGA ------------------------..................((((((((..((((((((......)))).))))((.....))...)))))))).((((((((.....)))).)))). ( -22.60) >DroMoj_CAF1 110158 93 + 1 ---------UUCUG--------C---UUGAACAGAUAAUAACUGCGCCUCUACUUUGAUAGGGCAAUGCCUGGAGGCGCUGAACAGUGA------ACCCAUCGAAGAAUUUAAUCUGGA ---------.....--------.---.....(((((.......(((((((((((.....))(((...))))))))))))....(.(((.------...))).).........))))).. ( -23.40) >DroAna_CAF1 110895 118 + 1 UCCAAAUCUCGAUUCCCAAAAUCGAAAUUU-UAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGUGCUCAAUAGCGAGGCUCAGCCAAUUGACGAAUUUAAUCUGGA ...((((.((((((.....)))))).))))-..........(((.(((((.(((((..((((......)))))))))(((....)))))))).)))((((((((.....))))).))). ( -27.50) >consensus _________CGCUG________C___UUGA_CAGAUAAUAACUGCGCCUCUACUUUGAUAGGACAAUGCCUGGAGGCGCUCAACAGCGA______GCCAAUUGACGAAUUUAAUCUGGA ...............................(((((.......(((((((((..(((......)))....)))))))))......((........))...............))))).. (-17.16 = -16.47 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:45 2006