Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,896,350 – 9,896,452 |
Length | 102 |
Max. P | 0.947129 |
Location | 9,896,350 – 9,896,452 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 72.61 |
Mean single sequence MFE | -16.88 |
Consensus MFE | -9.28 |
Energy contribution | -10.08 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.26 |
Mean z-score | -1.99 |
Structure conservation index | 0.55 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9896350 102 + 27905053 UUUUGAGUUUGAUUUGGCAGGGGCGUUGAAAUGAAACGUGCAAAUACUGGAAAUAAUCAAAUUCAGUCAAAAAAAAAAAACUUAAGAAA---UAGAG-AAA-AAAGA ..((((((((((((...((((.(((((.......))))).).....))).....))))))))))))..............(((.(....---).)))-...-..... ( -17.90) >DroVir_CAF1 116364 87 + 1 UUUUCCUUUACAUUUGGCAAAUCCAAUGAAAUGAAACGUGCAAAUACUGGAA-UAAUUGUGCACGGU----AG-----------AAAUC---UUGAA-AGACAGACU ......(((((..((((.....))))..........((((((..........-......))))))))----))-----------)....---.....-......... ( -11.69) >DroSec_CAF1 99760 98 + 1 UUUUGAGUUUGAUUUGGCAUGGGCGUUGAAAUGAAACGUGCAAAUACUGGAAAUAAUCAAAUUCAGU----AAAAAAAAACUUAAGAAA---UAGAG-AAA-AAAGA ((((((((((..(((.(((((..(((....)))...)))))...(((((((..........))))))----))))..))))))))))..---.....-...-..... ( -19.80) >DroEre_CAF1 100626 106 + 1 UUCUGAGUUUGAUUUGGCAGGGGCGUUGAAAUGAAACGUGCAAAUACUGGAAAUAAUCAAAUUUAGGCAAAAAAAAGAAGAGAAGAGCAGCGCAGAGCAAA-AAAGA .(((((((((((((...((((.(((((.......))))).).....))).....)))))))))))))......................((.....))...-..... ( -19.70) >DroYak_CAF1 103053 104 + 1 UUUUGAGUUUGAUUUGGCAGGGGCGUUGAAAUGAAACGUGCAAAUACUGGAAAUAAUCAAAUUUAGGCACAAAAAAAAGAAAUAAAGUAUAGUAAAGAAAA-AAA-- .(((((((((((((...((((.(((((.......))))).).....))).....)))))))))))))..................................-...-- ( -15.30) >consensus UUUUGAGUUUGAUUUGGCAGGGGCGUUGAAAUGAAACGUGCAAAUACUGGAAAUAAUCAAAUUCAGUCA_AAAAAAAAAAAUUAAAAAA___UAGAG_AAA_AAAGA ..((((((((((((..(((.(..(((....)))...).))).............))))))))))))......................................... ( -9.28 = -10.08 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:43 2006