Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,885,361 – 9,885,480 |
Length | 119 |
Max. P | 0.856555 |
Location | 9,885,361 – 9,885,480 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -29.80 |
Energy contribution | -30.20 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.93 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9885361 119 + 27905053 UUCGUUUUUCGCGCCGACCCCAAAAACGUUAGUAAUGCAAAUCGAUUGCGUUUGCGAAGUCAGAUGAUCCCAUCCAUGAUUUCCAUGCGUCAGUUGUCCCAGCUGUCAAUCGAAGAUCG ..(((((((.(........).))))))).............((((((((((.((.(((((((((((....))))..))))))))).))).((((((...)))))).)))))))...... ( -28.70) >DroSec_CAF1 88966 118 + 1 UUAGAUUUUCGCGCUGACCCA-AAAACGUUAGUAAUGCAAAUCGAUUGCGUUUGCGAAGUCAGAUGAUCGCAUCCAAGAUUUCCAUGCGUCAGUUGUCCCAGCUGUCAAUCGAAGAUCG ...(((((((((((((((...-.....))))))...)).....((((((((.((.((((((.((((....))))...)))))))).))).((((((...)))))).)))))))))))). ( -34.80) >DroSim_CAF1 92431 118 + 1 UUAGAUUUUCGCGCUGACCCC-AAAACGUUAGUAAUGCAAAUCGAUUGCGUUUGCGAAGUCAGAUGAUCGCAUCCAAGAUUUCCAUGCGUCAGUUGUCCCAGCUGUCAAUCGAAGAUCG ...(((((((((((((((...-.....))))))...)).....((((((((.((.((((((.((((....))))...)))))))).))).((((((...)))))).)))))))))))). ( -34.80) >DroEre_CAF1 89881 118 + 1 UCAGAUUUUCGCGCUGACCCC-AAAACAUUAGUAAUGCAAAUCGAUUGCGUUUGCGAAGUCAGAUGAUCGCAUCCAAGAUUUCCAUGCGUCAGUUGUCCCAGCUGUCAAACGAAGAUCG ...((((((((.((((.....-.........(((((((((.....))))).))))((((((.((((....))))...)))))))).))(.((((((...)))))).)...)))))))). ( -32.10) >DroYak_CAF1 91699 118 + 1 UCAGAAUUUCGCGCUGACCCC-AAAACAUUAGUAAUGCAAAUCCAUUGCGUUUGCGAAGUCAGAUGAUCGCAUCGAAGAUUUCCAUGCGUCAGUUGUCCCAGCUGUCAAUCGAAGAUCG ...((.(((((((((((....-......)))))(((((((.....))))))).))))))))....((((((((.((.....)).))))(.((((((...)))))).).......)))). ( -30.20) >consensus UUAGAUUUUCGCGCUGACCCC_AAAACGUUAGUAAUGCAAAUCGAUUGCGUUUGCGAAGUCAGAUGAUCGCAUCCAAGAUUUCCAUGCGUCAGUUGUCCCAGCUGUCAAUCGAAGAUCG ...((((((((.((.................(((((((((.....))))).))))((((((.((((....))))...))))))...))(.((((((...)))))).)...)))))))). (-29.80 = -30.20 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:41 2006