Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,869,778 – 9,869,882 |
Length | 104 |
Max. P | 0.564853 |
Location | 9,869,778 – 9,869,882 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.15 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -17.22 |
Energy contribution | -16.75 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.29 |
Mean z-score | -1.14 |
Structure conservation index | 0.68 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9869778 104 - 27905053 UUUUAGUUUUCGUACCUUUUGGUUUCCUGGCUGGAGUCAUACAUCAAUAU--AUUUUGGCUGCCUGAUUUGCGGCUAGGCAUAUAUAUUUUCUUCUGAUGCC-----------GCGC ((((((((.....(((....))).....)))))))).....(((((((((--(((((((((((.......))))))))).)))))).........)))))..-----------.... ( -23.60) >DroPse_CAF1 87532 112 - 1 UUCUAUUUUU----UUUUUGGAUUUCUUGGCUGGAGUCAUAUAUCAAUAUAUAUUUUGGCUGCCUGAUGUGCGGUGAGGCAUCGGCAUAGCCAUC-GAUAUGAGUAUGAAUACGAGC .((((.....----....)))).......(((.(..((((((.(((.(((......((((((((.(((((........))))))))..)))))..-.))))))))))))...).))) ( -26.60) >DroSec_CAF1 73999 96 - 1 UUUUAGUUUUCGUACCUUUUGGUUUCCUGGCUGUAGUCAUACAUCAAUAU--AUUUUGGCUGCCUGAUGUGCGGCUAGGCAUAUAUAUUUUCCUCGGA------------------- ........((((.(((....)))..((((((((((((((..((((((...--...)))).))..)))).))))))))))...............))))------------------- ( -23.10) >DroSim_CAF1 76677 112 - 1 UUUUAGUUUUCGUACCUUUUGGUUUCCUGGCUGGAGUCAUACAUCAAUAU--AUUUUGGCUGCCUGAUGUGCGGCUAGGCAUAUAUAUUUUCCUCGGAUACCGCCCU---CCCGCGC ....................(((.(((((((....)))).......((((--((((((((((((....).))))))))).)))))).........))).)))((...---...)).. ( -25.90) >DroEre_CAF1 74494 112 - 1 UUUUAGUUUUCCUACCUUUUGGUUUCCUGGCUGGAGUCAUACAUCAAUAU--AUUUUGGCUGCCUGACGUGCGGCUAGGCAUAUAUAUUUUCUGCUGAUAUCGCCCU---CCCGCGC .(((((((.....(((....))).....)))))))((((..((((((...--...)))).))..))))((((((...(((....(((((.......))))).)))..---.)))))) ( -28.40) >DroYak_CAF1 75915 100 - 1 UUUUGGUUUUCCUACCUUUUGGUUUCCUGGCUGGAGCCAUACAUCAAUAU--AUUUUGGCUGCCUGAUGUGCGGCUAGGCAUAUAUAUUUCC-----------CCCC---GCCGC-C ....(((......)))....(((....((((....)))).......((((--((((((((((((....).))))))))).))))))......-----------....---)))..-. ( -24.30) >consensus UUUUAGUUUUCGUACCUUUUGGUUUCCUGGCUGGAGUCAUACAUCAAUAU__AUUUUGGCUGCCUGAUGUGCGGCUAGGCAUAUAUAUUUUCCUC_GAUA_C_CCCU____CCGCGC .............(((....)))..((((((((..((((..((((((........)))).))..))))...))))))))...................................... (-17.22 = -16.75 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:37 2006