Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,865,263 – 9,865,381 |
Length | 118 |
Max. P | 0.531380 |
Location | 9,865,263 – 9,865,381 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.30 |
Mean single sequence MFE | -28.67 |
Consensus MFE | -18.60 |
Energy contribution | -19.43 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.12 |
Mean z-score | -1.23 |
Structure conservation index | 0.65 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9865263 118 + 27905053 UU-UGUAAGUAUCUUCCCUUUCAUCGAGUGUACUUUCUAGUUCUGGGCAUUGGCCAGUUUGGAACGCAUCGAACGGAAGCCGCUGCUCAUUCAUUUAAAACUUGUCUGCAAGUUGCCAA ..-((..(((..(((((......((((((((....(((((..((((.(...).)))).))))))))).))))..)))))..)))...)).........((((((....))))))..... ( -27.90) >DroPse_CAF1 82669 96 + 1 ----------------------AUCUACUGUA-UCCCAGGCUCUGGGCAUUGGCCAGCUCCGAACGCAUCGAACGGAAGCCGAUGCUCAUUCAUUUAAAACUUGUCUGCAACUUGCCAA ----------------------..........-.....(((..(((((((((((....((((..((...))..)))).)))))))))))............(((....)))...))).. ( -26.10) >DroEre_CAF1 70144 118 + 1 UU-UUAAAAGUGCUGUGCUUUUUUCGAGUGUACCUGCUGGCUCUGGGCAUUGGCCAGUUUGGAACGCAUCGAACGGAAGCCGCUGCUCAUUCAUUUAAAACUUGUCUGCAAGUUGCCAA ..-......(.((.(((((((((((((((((.((.((((((.(........)))))))..)).)))).))))).))))).))).)).)..........((((((....))))))..... ( -37.60) >DroYak_CAF1 71513 119 + 1 UUUUUGAAAAUUCUUCCCUUUUUUCGAGUGUACUUUCUGGCUCUGGGCAUUGGCCAGUUUGGAACGCAUUGAACGGAAGCCGCUGCUCAUUCAUUUAAAACUUGUCUGCAAGUUGCCAA ..((((((((..........)))))))).........((((..((((((.((((..(((..(......)..)))....)))).)))))).........((((((....)))))))))). ( -30.70) >DroAna_CAF1 70972 110 + 1 UC-UUCAAAAUU--------AUUUUCCGUGUAAUUCCCAACUCUGGACAGUGGCCAGUUUCGAACGCAUCGAACGGAAGCCGCUGCUCAUUCAUUUAAAACUUGUCUGCAAGUUGCCAA ..-.....((((--------((.......))))))........((..(((((((..(((.(((.....))))))....)))))))..)).........((((((....))))))..... ( -23.60) >DroPer_CAF1 84599 96 + 1 ----------------------AUCUACUGUA-UCCCAGGCUCUGGGCAUUGGCCAGCUCCGAACGCAUCGAACGGAAGCCGAUGCUCAUUCAUUUAAAACUUGUCUGCAACUUGCCAA ----------------------..........-.....(((..(((((((((((....((((..((...))..)))).)))))))))))............(((....)))...))).. ( -26.10) >consensus UU_UU_AAA_UU________UUAUCGAGUGUACUUCCUGGCUCUGGGCAUUGGCCAGUUUCGAACGCAUCGAACGGAAGCCGCUGCUCAUUCAUUUAAAACUUGUCUGCAAGUUGCCAA ......................................(((..((((((.((((..((((.((.....))))))....)))).)))))).........((((((....))))))))).. (-18.60 = -19.43 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:36 2006