Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,864,599 – 9,864,698 |
Length | 99 |
Max. P | 0.551071 |
Location | 9,864,599 – 9,864,698 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 85.05 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -16.79 |
Energy contribution | -16.57 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.71 |
Structure conservation index | 0.78 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.551071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9864599 99 - 27905053 UUUCGGUUUUGGUUUUGUUCUUCUAUUUUUUUUUUUUUCUGCUACAAGGAUAAUUUCUCGUGGCGUCAGUCAAGCGCGCUCACCCAUAGACAUAAAUAU .....(((((((............................(((((.((((....)))).)))))((.(((.......))).))))).))))........ ( -14.70) >DroSec_CAF1 68924 83 - 1 UUUCGGUUUUGGUCUUGUUCUU--------------GGUUGCUACAAGGAUAAUUCCUCGUGGCGUCAGUCAAGC--GCUCACCCAUAGACAUAAAUAU .....(((((((....((.(((--------------((.((((((.((((....)))).))))))....))))).--))....))).))))........ ( -23.00) >DroSim_CAF1 71584 83 - 1 UUUCGGUUUUGGUCUUGUUCUU--------------GGCUGCUACAAGGAUAAUUCCUCGUGGCGUCAGUCAAGC--GCUCACCCAUAGACAUAAAUAU .....(((((((....((.(((--------------(((((((((.((((....)))).)))))...))))))).--))....))).))))........ ( -26.50) >consensus UUUCGGUUUUGGUCUUGUUCUU______________GGCUGCUACAAGGAUAAUUCCUCGUGGCGUCAGUCAAGC__GCUCACCCAUAGACAUAAAUAU .....(((((((............................(((((.((((....)))).)))))((.(((.......))).))))).))))........ (-16.79 = -16.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:35 2006