Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,863,876 – 9,863,966 |
Length | 90 |
Max. P | 0.714180 |
Location | 9,863,876 – 9,863,966 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -15.40 |
Energy contribution | -15.28 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -2.11 |
Structure conservation index | 0.59 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9863876 90 - 27905053 GAUGGAGGUGUGGCAAAUUGAACACAUGUUCAUUGCCAAAUUCUUGAAUUAAAUUGGCAACGAGCAU------------------UUCCAAAUUGAUAAUCAACAAAA ..((((((((((((((..(((((....))))))))))................(((....)))))))------------------))))).................. ( -25.40) >DroSec_CAF1 68159 108 - 1 GGUGGAGGUGUGGCAAAUUGAACACAUGUUCAUUGCCAAAUUCUUGAAUUAAAUUGGCUAUGGGCAUCAGCAAUAUCAUGCAGGUUUCACAAUUGAUAGAUCACAAAA .(((((((..((((((..(((((....)))))))))))...))))......(((((((.....))....(((......)))........))))).......))).... ( -24.50) >DroSim_CAF1 70840 107 - 1 GGUGGAGGUGUGGCAAAUUGAACACAUGUUCAUUGCCAAAUUCUUGAAUUAAAUUGGCUAUGGGCAUCAGCAAUAUCAUGCAGGUUUCCCAAUUGAUA-AUCACAAAA .(((((((..((((((..(((((....)))))))))))...))))...............((((.(((.(((......))).)))..)))).......-..))).... ( -26.70) >DroYak_CAF1 70053 107 - 1 GGAGGAGGUGUGGCCAAUUGAGCACAUGUUCAUUGCCAAAUCCUUGAAUUAAAUUGCCCAUGGACAUCGGCAAUAGCAUUCAGGUGUUCAAAUUGAUA-AUCACAAAA .(((((....((((....(((((....)))))..))))..)))))((((...((((((.((....)).))))))...))))..(((.((.....))..-..))).... ( -28.20) >consensus GGUGGAGGUGUGGCAAAUUGAACACAUGUUCAUUGCCAAAUUCUUGAAUUAAAUUGGCUAUGGGCAUCAGCAAUAUCAUGCAGGUUUCCAAAUUGAUA_AUCACAAAA ....((((..((((((..(((((....)))))))))))...))))............................................................... (-15.40 = -15.28 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:34 2006