Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,407,827 – 1,407,927 |
Length | 100 |
Max. P | 0.984904 |
Location | 1,407,827 – 1,407,927 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.39 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -19.91 |
Energy contribution | -21.38 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.15 |
Mean z-score | -2.42 |
Structure conservation index | 0.64 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1407827 100 - 27905053 UGGCGUCCAUGGCAUCCAAUAGCAACAUUUGCAGUGCUGUGGGA----GCAGU--------AAAGAAGACGAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCAGUGGCUAU ((((.((((..((.(((.((((((.(.......))))))).)))----))...--------............((....)).........)))).))))((((...)))).. ( -31.80) >DroSec_CAF1 8617 100 - 1 UGGCGUCAAUGGCCUCCAAUAGCAACAUUUGCAGUGCUGUGGGA----GCAGU--------AAAGAAGACAAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCGGUGGCUAU .(((.....(((((((((((.(((.....)))..((((((....----)))))--------)...........((....)).......))))))))))).)))......... ( -35.20) >DroSim_CAF1 8282 100 - 1 UGGCGUCAAUGGCCUCCAAUAGCAACAUUUGCAGUGCUGUGGGA----GCAGU--------AAAGAAGACGAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCGGUGGCUAU .(((.....(((((((((((.(((.....)))..((((((....----)))))--------)...........((....)).......))))))))))).)))......... ( -35.20) >DroEre_CAF1 12138 94 - 1 ------CCAUAUCCUCCAAUAGCAACGUAGUCAGUGCUGUGGGU----GCAAU--------AAAGAAAACGAAGCGCAAGCGUAAAAAGUUGGAGGCCAAGCCUGUGGCUAU ------......((((((((.(((.((((((....))))))..)----))...--------............((....)).......))))))))...((((...)))).. ( -26.70) >DroYak_CAF1 7909 94 - 1 ------CCAUAGCCUCCAAUAGCAAAAUUGGCAGUGCUGUGGGA----GCCAU--------AAAAAAGACGAAGCGUAAACGUAAAAAAUUGGAGGCUAAGCCAGUUGCUAU ------((((((((((((((......))))).)).))))))).(----((...--------............(((....)))....((((((........))))))))).. ( -25.80) >DroAna_CAF1 6985 102 - 1 UC-------UGG---CCAAUAGCAGUUCUGGCGCUGGAAUGGGUGGCAGCAAGAAGGGCAGAAAGGACAAGACGCGCAAGCGCAAAAAACUGGAGGCCAAACCCGUGGCCAU ..-------(((---((..((((.((....))))))..(((((((((.((.......))...........(.(((....))))............)))..))))))))))). ( -32.90) >consensus UG____CCAUGGCCUCCAAUAGCAACAUUGGCAGUGCUGUGGGA____GCAAU________AAAGAAGACGAAGCGCAAGCGUAAAAAGUUGGAGGCUAAGCCAGUGGCUAU .........(((((((((((((((..........)))))).................................((....)).........)))))))))(((.....))).. (-19.91 = -21.38 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:28 2006