Locus 3649

Sequence ID 3R_DroMel_CAF1
Location 9,862,431 – 9,862,521
Length 90
Max. P 0.515505
window5866

overview

Window 6

Location 9,862,431 – 9,862,521
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.98
Mean single sequence MFE -24.45
Consensus MFE -11.90
Energy contribution -12.27
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.60
Structure conservation index 0.49
SVM decision value -0.04
SVM RNA-class probability 0.515505
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9862431 90 + 27905053
GUGUCACUGUGUCCUGUGU------------GUCCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACGUAAAGGACACUCACAGU
(((.....(((((((.(((------------(((..(.((((((((((((........))))))).......))))).)..)))))).))))))).)))... ( -25.01)
>DroSec_CAF1 66828 80 + 1
GUGUCACUGUGU---------------------CCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACGUA-AGGACACUCACAGU
(((.....((((---------------------(((....((.(((((((........)))))))........(((.....))))).-))))))).)))... ( -20.90)
>DroSim_CAF1 69450 80 + 1
GUGUCACUGUGU---------------------CCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACGUA-AGGACACUCACAGU
(((.....((((---------------------(((....((.(((((((........)))))))........(((.....))))).-))))))).)))... ( -20.90)
>DroEre_CAF1 67385 101 + 1
GUGUCACUGUGUCCUGUGUCCUGUGUCCUGCGUCCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACGUA-AGGACACUCGCAGU
.............(((((....((((((((((((..(.((((((((((((........))))))).......))))).)..))))).-))))))).))))). ( -31.41)
>DroYak_CAF1 68066 101 + 1
GUGUCACUGUGUCCAGUGUCCUGUGUCCUGCGUCCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACGUA-AGGACACUCGCAGC
(((.(((((....)))))....((((((((((((..(.((((((((((((........))))))).......))))).)..))))).-))))))).)))... ( -31.81)
>DroAna_CAF1 66851 76 + 1
GUGUCAGUGUGU---------------------CCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACAUC-----CCCUAGCCAC
(((((((.(((.---------------------(..(((((..(((((((........)))))))..))))).).))).))))))).-----.......... ( -16.70)
>consensus
GUGUCACUGUGU_____________________CCUGUUGACAUAAUCGUUUGCCAUCAUGAUUAAUUUAAUUGUCACUUUGACGUA_AGGACACUCACAGU
(((((...............................(((((..(((((((........)))))))..)))))((((.....)))).....)))))....... (-11.90 = -12.27 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:33 2006