Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,851,774 – 9,851,879 |
Length | 105 |
Max. P | 0.887543 |
Location | 9,851,774 – 9,851,879 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -25.01 |
Consensus MFE | -20.38 |
Energy contribution | -20.30 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.81 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9851774 105 + 27905053 GAGCUUUGGAAUCCAGCAUUUUUUGAGAGCGAAGAACCGCAGUUCGAACUACAAAUGAGAUGUUCUCAAAAAGUAGCUACAUCUCAUAAUGGAAUUUGGUAGAAA ...(((..((.((((......((((((.(((......)))..))))))......(((((((((.(((.....).))..)))))))))..)))).))..).))... ( -24.00) >DroSec_CAF1 56216 105 + 1 GAGCUUUGGAAUCCAGCAUUUUUUGAGAGCGAAGAACCACAGUUCGAACUACAAAUGAGAAGUUCUCAAGAAGUAGCUACAUCUGAUAAAGGAAUUUGGUAGAAA ...(((..((.(((((((((((((((((((...((((....))))...((.(....)))..))))))))))))).))).(....).....))).))..).))... ( -24.90) >DroSim_CAF1 58615 105 + 1 GAGCUUUGGAAUCCAGCAUUUUUUGAGAGCGAAGAACCACAGUUCGAACUACAAAUGAGAAGUUCUCAAAAAGUAGCUACAUCUCAUAAAGGAAUUUGGUAGAAA ...(((..((.(((((((((((((((((((...((((....))))...((.(....)))..))))))))))))).)))............))).))..).))... ( -23.60) >DroEre_CAF1 57201 105 + 1 GAGCUUUGGAAUCGAGCAUUUUUUGAGAGCGAAGAACCACAGUUCGAACUACAAAAGUGAAGUUCUCAAAAAGUAGCUACGUCUCAUACUGGAAUUGGGUGAUAA ........((..((((((((((((((((((...((((....))))..(((.....)))...))))))))))))).))).))..)).((((.......)))).... ( -25.70) >DroYak_CAF1 57830 105 + 1 GAGCUUUGGAGUCCAGCAUUUUUUGAGAGCGUAGAACCACAGUUCGAGCUACAAAAGUGAAGUUCUCCAAAAAUAGCUACAUCUCAUAAUGGAAUUUGAUGAAAA .((((((((((..(..(((((((....(((...((((....))))..)))..)))))))..)..))))))....)))).((((..............)))).... ( -26.84) >consensus GAGCUUUGGAAUCCAGCAUUUUUUGAGAGCGAAGAACCACAGUUCGAACUACAAAUGAGAAGUUCUCAAAAAGUAGCUACAUCUCAUAAUGGAAUUUGGUAGAAA .....(..((.(((((((((((((((((((...((((....))))......(......)..))))))))))))).)))............))).))..)...... (-20.38 = -20.30 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:28 2006