| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,841,819 – 9,841,913 |
| Length | 94 |
| Max. P | 0.572652 |
| Location | 9,841,819 – 9,841,913 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 88.93 |
| Mean single sequence MFE | -23.95 |
| Consensus MFE | -18.75 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9841819 94 + 27905053 UCACACGGCGUAUGCGUAAUAUGAGCAAUUUCGGCGAAACGCUGUUGCGUAUGGCAGAUUACAAAUGCGCAAGUGAAACCAGCUAUUUUAAA-AA ((((...((((((..(((((.((((....))))((.(.((((....)))).).))..)))))..))))))..))))................-.. ( -24.80) >DroSec_CAF1 47615 94 + 1 UCACACGGCGUAUGCGUAAUAUGAGCAAUUUCGGCGUAACGCUGUUGCGUAUGGCAGAUUACAAAUGCGCAAGUGAAACCAGCAAUCUUUAA-AA (((((((((((.(((((.....((....))...))))))))))))(((((((............))))))).))))................-.. ( -26.50) >DroEre_CAF1 48883 95 + 1 UCACACGGCGUAUGCGUAAUAUAGACAAUUUCUGCGGAAGGCUGUUGCGUAUGUCCGAUUAAAAAUACGCAAGUGAAACCAGCAAUUUGAAAUAG ((((...((((((...((((...((((.......(....)((....))...))))..))))...))))))..))))................... ( -21.70) >DroYak_CAF1 49346 95 + 1 UCACACGGCGUAUGCGUAAUAUGAGCAAUUUCUGCGGAACACUGUUGCGUAUGGCAGAUUACAAAUACGCAAGUGAAACUAGCAAUUUGAAGUAA ((((...((((((..(((((....(((.....)))......(((((......))))))))))..))))))..))))................... ( -22.80) >consensus UCACACGGCGUAUGCGUAAUAUGAGCAAUUUCGGCGGAACGCUGUUGCGUAUGGCAGAUUACAAAUACGCAAGUGAAACCAGCAAUUUGAAA_AA (((((((((((...(((...((.....))....)))..)))))))(((((((............))))))).))))................... (-18.75 = -19.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:24 2006