Locus 3643

Sequence ID 3R_DroMel_CAF1
Location 9,840,307 – 9,840,417
Length 110
Max. P 0.622905
window5856

overview

Window 6

Location 9,840,307 – 9,840,417
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 91.27
Mean single sequence MFE -28.12
Consensus MFE -20.16
Energy contribution -21.04
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.09
Structure conservation index 0.72
SVM decision value 0.18
SVM RNA-class probability 0.622905
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9840307 110 - 27905053
AGUGUAAUUUACGCGGUCCAAUACUUUUUGCGCUCAACUUAUGAAGGGCAUGUGUCCUAUAAAGUUCAAAGUUUACAAAGUAUUUGGAUAUUUUCAUGGUUUUGAGAAAC
.(((((...))))).((((((((((((.((.(((.(((((.((.(((((....))))).)))))))...))).)).)))))).)))))).((((((......)))))).. ( -28.30)
>DroSec_CAF1 46062 110 - 1
AGUGUAAUUUACGCGGUCCAAUACUUUUUGCGCUCAACUUAUGAAGGGCAUGUGUCCUAUAAAGUUCAGAGUUUACAAAGUAUUUGGAUAUUUUCAUGGUUUUGAGAAAC
.(((((...))))).((((((((((((.((.(((((((((.((.(((((....))))).)))))))..)))).)).)))))).)))))).((((((......)))))).. ( -31.50)
>DroSim_CAF1 47907 110 - 1
AGCGUAAUUUACGCGGUCCAAUACUUUUUGCGCUCAACUUAUGAAGGGCAUGUGUCCUAUAAAGUUCAGAGUUUACAAAGUAUUUGGAUAUUUUCAUGGUUUUGAGAAAC
.(((((...))))).((((((((((((.((.(((((((((.((.(((((....))))).)))))))..)))).)).)))))).)))))).((((((......)))))).. ( -33.40)
>DroEre_CAF1 47323 106 - 1
AUUGUAAUUUACGCGGUCCAAUACUUUUUGCGCUCAGCUUAUGAAGACCAUGUGUCCUAUAAAGUUCAAAGUUAAGAAAGUAUUUGGA----UGCAUGAUUUUGAGAAGC
...........(((((...........)))))....((((.(.((((.(((((((((.(((...(((........)))..)))..)))----)))))).)))).).)))) ( -22.80)
>DroYak_CAF1 47792 110 - 1
AGUGUAAUUUACGCGGUCCAAUACUUUUUGCGCUCAGCUUAUGAAGGGCAUGUGUCCUAUAAAGUUCAAAGUUAACAAAGUAUUUUGACAUAUUCAUGAUUGUUGGAAGU
.(((((...)))))..(((((((......((.....))(((((((((((....))))).....((.((((((.........))))))))....)))))).)))))))... ( -24.60)
>consensus
AGUGUAAUUUACGCGGUCCAAUACUUUUUGCGCUCAACUUAUGAAGGGCAUGUGUCCUAUAAAGUUCAAAGUUUACAAAGUAUUUGGAUAUUUUCAUGGUUUUGAGAAAC
.(((((...))))).((((((((((((.((.(((.(((((.((.(((((....))))).)))))))...))).)).)))))).))))))..................... (-20.16 = -21.04 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:23 2006