Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,835,183 – 9,835,285 |
Length | 102 |
Max. P | 0.999696 |
Location | 9,835,183 – 9,835,285 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 95.46 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -21.94 |
Energy contribution | -21.94 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.92 |
SVM decision value | 3.90 |
SVM RNA-class probability | 0.999696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9835183 102 - 27905053 CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA ((((((((.((((((....)))))).....(((.(((((...)))))...)))............))))))))............................. ( -24.50) >DroSec_CAF1 41060 102 - 1 CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA ((((((((.((((((....)))))).....(((.(((((...)))))...)))............))))))))............................. ( -24.50) >DroSim_CAF1 42915 102 - 1 CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA ((((((((.((((((....)))))).....(((.(((((...)))))...)))............))))))))............................. ( -24.50) >DroEre_CAF1 42346 95 - 1 CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCACAACUGAA-------AACAGAAAACCCAAAACCCAAUCCCA .(((((((.((((((....)))))).....(((.(((((...)))))...)))............))))-------)))....................... ( -22.80) >DroYak_CAF1 42706 95 - 1 CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAA-------AACAGAAAACCCAAAACCCAAUCCCA .(((((((.((((((....)))))).....(((.(((((...)))))...)))............))))-------)))....................... ( -22.80) >consensus CGUUUUCAAGGUGGCAACUGUCAUUCACUUGGCGGCCAGCAACUGGCGAAGCCUCAACUCAAAACUGAAAACGGAAAACAGAAAACCCAAAACCCAAUCCCA .((((((...(.(((...(((((......)))))(((((...)))))...))).)...(((....)))............))))))................ (-21.94 = -21.94 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:22 2006