Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,834,328 – 9,834,429 |
Length | 101 |
Max. P | 0.989352 |
Location | 9,834,328 – 9,834,429 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -24.27 |
Consensus MFE | -20.90 |
Energy contribution | -21.10 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.86 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9834328 101 + 27905053 AAUGUGCCACAUCCAUUUGUCUGGUCUUUGUCCCUUUUAUUUUUCGACAAGAAAAAGUCUGGCCAGACCAGACGCCUUCUAUCGUUAAUCCAU--UCAUGGGC ..................(((((((((..(((.......((((((.....))))))....))).)))))))))((((................--....)))) ( -23.05) >DroSec_CAF1 40200 103 + 1 AAUGUGCCACAUCCAUUUGUCUGGUCUUUGUCCCUUUUAUUUUUCGACAAGAAAAAGUCUGGCCAGACCAGACGCCUGCGAUCGUUAAUCCAUUUUCAUGGGC .....((((((((((..((((((((((..(((.......((((((.....))))))....))).))))))))))..)).))).)).....(((....)))))) ( -26.50) >DroSim_CAF1 42054 103 + 1 AAUGUGCCACAUCCAUUUGUCUGGUCUUUGUCCCUUUUAUUUUUCGACAAGAAAAAGUCUGGCCAGACCAGACGCCUGCGAUCGUUAAUCCAUUUUCAUGGGC .....((((((((((..((((((((((..(((.......((((((.....))))))....))).))))))))))..)).))).)).....(((....)))))) ( -26.50) >DroEre_CAF1 41474 100 + 1 AAUGUGCCACAUCCAUUUGUCUGGUCUUUGUCCCUUUAUU-UUUCGACAAGAAAAAGUCUGGCCAGACCAGACGCCUUCAAUCGUUAAUCCAU--UCAUUGGC .....((((.........(((((((((..(((......((-((((.....))))))....))).)))))))))((........))........--....)))) ( -23.10) >DroYak_CAF1 41811 101 + 1 AAUGUGCCACAUCCAUUUGUCUGGUCUUUGUCCCUUUGUUUUUUCGACAAGAAAAAGUCUGGCCAGACCAGACGCCUUCAAUCGUUAAUCCAU--UCAUUGGC .....((((.........(((((((((..(((.....((((((((.....))))))).).))).)))))))))((........))........--....)))) ( -22.20) >consensus AAUGUGCCACAUCCAUUUGUCUGGUCUUUGUCCCUUUUAUUUUUCGACAAGAAAAAGUCUGGCCAGACCAGACGCCUUCAAUCGUUAAUCCAU__UCAUGGGC .....(((..........(((((((((..(((.......((((((.....))))))....))).)))))))))((........))...............))) (-20.90 = -21.10 + 0.20)
Location | 9,834,328 – 9,834,429 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -24.70 |
Energy contribution | -24.90 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.85 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989352 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9834328 101 - 27905053 GCCCAUGA--AUGGAUUAACGAUAGAAGGCGUCUGGUCUGGCCAGACUUUUUCUUGUCGAAAAAUAAAAGGGACAAAGACCAGACAAAUGGAUGUGGCACAUU ((((((..--.........((((((((((.((((((.....)))))).))))).)))))....................(((......)))))).)))..... ( -28.90) >DroSec_CAF1 40200 103 - 1 GCCCAUGAAAAUGGAUUAACGAUCGCAGGCGUCUGGUCUGGCCAGACUUUUUCUUGUCGAAAAAUAAAAGGGACAAAGACCAGACAAAUGGAUGUGGCACAUU ((((((....))).....((.(((.((...(((((((((..((....((((((.....))))))......))....)))))))))...))))))))))..... ( -30.50) >DroSim_CAF1 42054 103 - 1 GCCCAUGAAAAUGGAUUAACGAUCGCAGGCGUCUGGUCUGGCCAGACUUUUUCUUGUCGAAAAAUAAAAGGGACAAAGACCAGACAAAUGGAUGUGGCACAUU ((((((....))).....((.(((.((...(((((((((..((....((((((.....))))))......))....)))))))))...))))))))))..... ( -30.50) >DroEre_CAF1 41474 100 - 1 GCCAAUGA--AUGGAUUAACGAUUGAAGGCGUCUGGUCUGGCCAGACUUUUUCUUGUCGAAA-AAUAAAGGGACAAAGACCAGACAAAUGGAUGUGGCACAUU ((((.(.(--((.(.....).))).)....(((((((((..((....((((((.....))))-)).....))....))))))))).........))))..... ( -27.80) >DroYak_CAF1 41811 101 - 1 GCCAAUGA--AUGGAUUAACGAUUGAAGGCGUCUGGUCUGGCCAGACUUUUUCUUGUCGAAAAAACAAAGGGACAAAGACCAGACAAAUGGAUGUGGCACAUU ((((.(.(--((.(.....).))).)....(((((((((..((....((((((.....))))))......))....))))))))).........))))..... ( -27.20) >consensus GCCCAUGA__AUGGAUUAACGAUCGAAGGCGUCUGGUCUGGCCAGACUUUUUCUUGUCGAAAAAUAAAAGGGACAAAGACCAGACAAAUGGAUGUGGCACAUU (((........((......)).........(((((((((..((....((((((.....))))))......))....)))))))))..........)))..... (-24.70 = -24.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:21 2006