Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,400,795 – 1,400,885 |
Length | 90 |
Max. P | 0.989162 |
Location | 1,400,795 – 1,400,885 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -13.39 |
Consensus MFE | -13.47 |
Energy contribution | -14.02 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.44 |
Structure conservation index | 1.01 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1400795 90 + 27905053 UCUCUAUCUAGCUUUGUUACUCAUUUAUGCUAGCUAAACAUACAUAUAGCUCUAUACCAUAUAAAAUAUCAAGAUUAAAGCUCUUGCUAC ..(((...((((..((.....)).....))))((((..........)))).....................)))....(((....))).. ( -7.20) >DroSec_CAF1 1627 80 + 1 G--CUAGCUAGCUUUGUUACCUGUUUAUGCUAGUUAAACAGACAUA--------UACCAUAUUAAAUAGCAAGAUUAAAGCUCUUGCUAC .--.((((((((................))))))))..........--------............((((((((.......)))))))). ( -17.69) >DroSim_CAF1 875 80 + 1 G--CUAGCUAGCUUUGUUACCUGUUUAUGCUAGUUAAACAGACAUA--------UACCAUAUUAAAUAGCAAGAUUAAAGCUCUUGUUAC .--.((((((((................))))))))..........--------............((((((((.......)))))))). ( -15.29) >consensus G__CUAGCUAGCUUUGUUACCUGUUUAUGCUAGUUAAACAGACAUA________UACCAUAUUAAAUAGCAAGAUUAAAGCUCUUGCUAC ....((((((((................))))))))..............................((((((((.......)))))))). (-13.47 = -14.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006