Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,833,473 – 9,833,565 |
Length | 92 |
Max. P | 0.767783 |
Location | 9,833,473 – 9,833,565 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.59 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -18.66 |
Energy contribution | -18.66 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.76 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9833473 92 + 27905053 AUAUA-AAAA-GAGUGAAUUUUGUAGAGUGCAUUAAGGCAUUCGCUUCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGCG .((((-(((.-.......)))))))((((((......))))))....(((((...(((((.(((((((....))))))).)))))....))))) ( -26.50) >DroSec_CAF1 39252 92 + 1 AUAUA-AUAA-GAGAGAAAUUCGUACAGUGUAUUAAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG .....-....-.........(((((((((((......)))))....(((.(((((...((((....)))).))))))))))))))......... ( -17.80) >DroSim_CAF1 41115 92 + 1 AUAUA-AAAG-GAGCGAAUUUUGUACAGUGUAUUAAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG .....-...(-((((((((...((((...))))......))))))))).(((...(((((.(((((((....))))))).)))))....))).. ( -27.10) >DroEre_CAF1 40577 94 + 1 AUAUAGAGAGAGAGAGAAGUUUGAACAGUGUAUUCAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG ...........(((.((((((((((.......))))))).))).)))(.(((...(((((.(((((((....))))))).)))))....))).) ( -23.50) >DroYak_CAF1 40882 92 + 1 AUGUA-AGAG-GAGCGAAAUUUGAGCAGUGUAUUCAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG .....-...(-(((((((.((((((.......))))))..)))))))).(((...(((((.(((((((....))))))).)))))....))).. ( -28.20) >consensus AUAUA_AAAG_GAGAGAAAUUUGUACAGUGUAUUAAGGCAUUCGCUCCGCAAGUUUUGCAACUAAAGUUGAGACUUUGGGUGCGGUAAAUUGGG ...........((((((..........((((......))))))))))(.(((...(((((.(((((((....))))))).)))))....))).) (-18.66 = -18.66 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:17 2006