Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,825,897 – 9,825,994 |
Length | 97 |
Max. P | 0.877542 |
Location | 9,825,897 – 9,825,994 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -25.14 |
Energy contribution | -25.02 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9825897 97 + 27905053 UACACCGACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCAAAGGGGAUUUGCAAGGUAAUGGCA--AGAGCUUUUCCGACAC .....((..(((((....((((....))))..((((.((((...(((.((..((((....))))..)))))..)))).)))--)..)))))..)).... ( -27.90) >DroSec_CAF1 31950 97 + 1 UACACCAACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAUUGGCA--AGAGCUUUUCCGACAC .....((((((.(((...((((....))))...)))..))))))(((.((..((((....))))..)))))((....(((.--...)))...))..... ( -30.10) >DroSim_CAF1 33758 99 + 1 UACACCAACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCAAAAGAGCUUUUCCGACAC .....((((((.(((...((((....))))...)))..))))))(((.((..((((....))))..)))))((....(((......)))...))..... ( -30.30) >DroEre_CAF1 33174 91 + 1 UAC------CAAGUAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCA--AGAGCUUUUCCGACAC ...------.........((((....))))...(((((..(((.((((((((((((....))))..........)))))))--).)))....)).))). ( -26.60) >DroYak_CAF1 33547 91 + 1 UAC------CAAGCAUCCGCACAUGUGUGCAAUUGUGGUGGCUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCA--AGAGCUUUUCCGACAC ...------...(((...((((....))))...)))((.((((.((((((((((((....))))..........)))))))--).))))...))..... ( -30.70) >consensus UACACC_ACGAAGCAUCCGCACAUGUGUGCAAUUGUGGUUGUUGUUGUCAUUUCCCGAAGGGGAUUUGCAAGGUAAUGGCA__AGAGCUUUUCCGACAC ...........((((.(((((..((....))..))))).)))).(((.((..((((....))))..)))))((....(((......)))...))..... (-25.14 = -25.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:16 2006