Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,815,430 – 9,815,529 |
Length | 99 |
Max. P | 0.500000 |
Location | 9,815,430 – 9,815,529 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 76.07 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -13.67 |
Energy contribution | -14.73 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.29 |
Mean z-score | -1.50 |
Structure conservation index | 0.56 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9815430 99 + 27905053 GGAAA----GCGGGGACCACAGUGAAUACC--CAGUCGGUGGGAAAUCAAUUAAGUGAGCAAGAAAAUCUUAAAGGAUUUUCUUUGU-------GUACGCGGCUAAGAAUUG ....(----((.(.(..((((.(((...((--((.....))))...)))...........((((((((((....)))))))))))))-------)..).).)))........ ( -24.80) >DroSec_CAF1 21702 101 + 1 GGGAAGCAAGCGGGGACCACAGUGAAUACC--CAUUCGGUGGGAAAUCAAUUAAGUGAGCAGGGAAAUCUUAAAGGAUUUCCUUUGU-------GU--GCGGCUAAGAAAUG .((..(((.(((....)(((..(((...((--(((...)))))...))).....))).))((((((((((....))))))))))...-------.)--))..))........ ( -26.90) >DroSim_CAF1 22305 97 + 1 GAGAA----GCGGGGACCACAGUGAAUACC--CAUUCGGUGGGAAAUCAAUUAAGUGAGCAGGGAAAUCCUAAAGGAUUUCCUUUGU-------GU--GCGGCUAAGAAAUG ....(----((((...((.((.(((((...--.))))).))))...))......(((.((((((((((((....)))))))).))))-------.)--)).)))........ ( -27.10) >DroEre_CAF1 22698 95 + 1 GGGAA----GCGGGAACCACAGUGAAUACC--CAUUCAGUGGGAAAUCAAUUAAGUGAGCAGGGGAAUCUAAAAGGAUUUCCUUUGU-------GU----GGCUGAGAAAUG .....----.(((...((((..(((...((--(((...)))))...))).........((((((((((((....))).)))))))))-------))----)))))....... ( -24.10) >DroYak_CAF1 22914 97 + 1 GCGAA----GCGGGGACCACAGUGAAUACC--CAUUCAGUGGGAAAUCAAUUAAGUGAGCAGGGAAAUCUGAAAGGAUUUCCUUUGU-------GU--GCGGCUAUAAAAUG ....(----((((...((.((.(((((...--.))))).))))...))......(((.((((((((((((....)))))))).))))-------.)--)).)))........ ( -27.70) >DroAna_CAF1 22322 103 + 1 CUGAUCCCAGCCGG---UACAGUGAACACACACAUUGAAGGAAAAAUCAAUUAUCCGAACAGGA---UGUGAAUAAAAAUCCUUUGAAAUAUUAGU--GA-AAUUUAAACUC .(((.....((..(---((..(((......))).(..(((((.........(((((.....)))---))..........)))))..)..)))..))--..-...)))..... ( -16.51) >consensus GGGAA____GCGGGGACCACAGUGAAUACC__CAUUCAGUGGGAAAUCAAUUAAGUGAGCAGGGAAAUCUUAAAGGAUUUCCUUUGU_______GU__GCGGCUAAGAAAUG .........((.....((.((.(((((......))))).))))...(((......)))))((((((((((....))))))))))............................ (-13.67 = -14.73 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:15 2006