Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,814,117 – 9,814,219 |
Length | 102 |
Max. P | 0.568173 |
Location | 9,814,117 – 9,814,219 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 89.29 |
Mean single sequence MFE | -25.25 |
Consensus MFE | -17.00 |
Energy contribution | -18.64 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.06 |
Mean z-score | -2.28 |
Structure conservation index | 0.67 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568173 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9814117 102 - 27905053 UUUCCUACCCCUUCCCAUUGGAC-----GCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCU-UUGGUGGGUUACGAAAAAA---UAAAAGAGAAACAAACGCAAAUACAAA ...((((((.......(((((..-----.))))).(((((((((((......)))))))))-))))))))...........---........................... ( -26.50) >DroSec_CAF1 20396 102 - 1 UUUCCUACCCCUUCCCAUUAGUC-----GCCCAUAAAAGCCGGGCCGAAAUGGGUUUGGCUUUUGGUGGGUUACGAAAAA----AAAAAGAGAAACAAACGCAAAUACAAA ....................((.-----((((((((((((((((((......)))))))))))).)))))).))......----........................... ( -28.10) >DroSim_CAF1 21004 106 - 1 UUUCCUACCCCUUCCCAUUAGCC-----GCCCAUAAAAGCCGGGUCGAAAUGGGUUUGGCUUUUGGUGGGUUACGAAAAAAAAAAAAAAGAGAAACAAACGCAAAUACAAA ((((.((.(((...(((..((((-----((((((...............))))))..))))..))).))).)).))))................................. ( -24.16) >DroEre_CAF1 21407 95 - 1 UUUCCUACCACUUCCCAUUCGAC-----GCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCUU----UGGGUUACGAAAA-------AAAGAGAAACAAACGCAAAUACAAA ..........(((....((((..-----(((....(((((((((((......))))))))))----).)))..))))..-------...)))................... ( -22.70) >DroYak_CAF1 21576 103 - 1 UUUCCUACCCCUUCCCAUUAGACUUUAGUCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCUU----UGGGUUACGAAAAA----AAAAAGAGAAACAAACGCAAAUACAAA ((((..((((......(((.(((....))).))).(((((((((((......))))))))))----)))))...))))..----........................... ( -24.80) >consensus UUUCCUACCCCUUCCCAUUAGAC_____GCCAAUAAAAGCCGGGCCGAAAUGGGUUUGGCUUUUGGUGGGUUACGAAAAA____AAAAAGAGAAACAAACGCAAAUACAAA .............................(((.(((((((((((((......))))))))))))).))).......................................... (-17.00 = -18.64 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:14 2006