Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,810,265 – 9,810,373 |
Length | 108 |
Max. P | 0.656203 |
Location | 9,810,265 – 9,810,373 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -25.35 |
Consensus MFE | -19.50 |
Energy contribution | -20.70 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.41 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9810265 108 + 27905053 AAUGACACAUUAUAAACACCUAAAAUAACUUUUUGUCAGUGCAUCCUGUCUGUUUUUCCCACAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA ..(((((..........................)))))((((.((((((..(.....)..))))))...(((((....((.....))..))))))))).......... ( -21.57) >DroSec_CAF1 16624 89 + 1 -------------------CUUAAUUAACUUUUUCUCAGUGCAUCCUGUCUGUUGUUCCCGCAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUUGCCGGGA -------------------...................((((.(((((((..(((((((....)))))))..))))..)))..(((.....))))))).......... ( -24.90) >DroSim_CAF1 17179 89 + 1 -------------------CUUAAAUAACUUUUUCUCAGUGCACCCUGUCUGUUGUUCCCGCAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA -------------------...................((((.((.((((..(((((((....)))))))..))))..))...(((.....))))))).......... ( -23.80) >DroEre_CAF1 17657 108 + 1 AAGGACACAUUAUAAACAACUGAAAGAACUUUUUGUCAGUGCAUCCUGUCUGCUGUUCCCACAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGAA .(((((............(((((.(((....))).)))))...(((((((.((((((((....)))))))).))))..)))..))))).(((.((.....)).))).. ( -33.00) >DroYak_CAF1 17667 100 + 1 AAGGACACGUUAUAAACAACUAGAAUAGCUUUUUGUCAGUGUAUCCUGUCAUC--------CGGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA .(((((..(((((...........)))))....(((((((((.(((((.....--------)))))))).)))))).......))))).(((.((.....)).))).. ( -23.50) >consensus AA_GACAC_UUAUAAACA_CUAAAAUAACUUUUUGUCAGUGCAUCCUGUCUGUUGUUCCCACAGGAACAGUUGACAUUGGAACGUCCUAUCGACGCACAUCGCCGGGA ......................................((((.(((((((..(((((((....)))))))..))))..)))..(((.....))))))).......... (-19.50 = -20.70 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:12 2006