Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,809,265 – 9,809,370 |
Length | 105 |
Max. P | 0.554891 |
Location | 9,809,265 – 9,809,370 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.30 |
Mean single sequence MFE | -28.95 |
Consensus MFE | -21.06 |
Energy contribution | -20.58 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.73 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9809265 105 + 27905053 GUGUGAGGUCGAUGAGCACAUAUGG--------GGGAAAACUAUGGGUGCAGGGGGUCGAUAAGGAGGUACCCUAAAUUAUAAUCAAUUGCAUUGCCAAGUUGAACAGACAUA------ ......((.(((((.((((.(((((--------.......))))).))))((((..((........))..))))................)))))))..(((.....)))...------ ( -26.00) >DroSec_CAF1 15900 104 + 1 GUGUGAGGUCGAUGAGCACAUAUGG---------GGAAAACUAUGGGUGCAGGGAGUCGAUAAGGAGGUACCCUAAAUUAUACUCAAUUGCAUUGCCAAGUUGAAAAUACAUA------ (((((...(((((..((((.(((((---------......))))).)))).((.(((((((...(((...............))).)))).))).))..)))))...))))).------ ( -25.96) >DroSim_CAF1 16267 104 + 1 GUGUGAGGUCGAUGAGCACAUAUGG---------GGAAAACUAUGGGUGCAGGGAGUCGAUAAGCAGGUACCCUAAAUUAUACUCAAUUGCAUUGCCAAGUUAAAAAUACAUA------ ......((.(((((.((((.(((((---------......))))).))))((((..((........))..))))................)))))))................------ ( -24.70) >DroEre_CAF1 16464 115 + 1 GUGUGAGGUCGAUGAGCACAUAUGGAAACGAGUGGGAAAGCUGUGGGUGCAGGGGGUCGAUAGGGAGGUACCCUAAAUAA-ACCCAAUUGCAUUGCUACGUUGAACAUAUA---GUACA (((((...(((((((((((((.((....)).))).....((..(((((..((((..((........))..))))......-)))))...))..)))).)))))).))))).---..... ( -36.00) >DroYak_CAF1 16520 119 + 1 GUGUGAGGUCGAUGAGCACAUAUGGGAACGAGUGGGACAGCUGUGGGUGCAGGGGGUCGAUUGGGAGGUACCCUAAAUAAUACUCAAUUGCAUUGCUGAGUUGAUCAUAUAUAUAUAUA (((((.(((((((.((((...(((.((..(((((.(((..((((....))))...)))..(((((......)))))....)))))..)).)))))))..))))))).)))))....... ( -32.10) >consensus GUGUGAGGUCGAUGAGCACAUAUGG________GGGAAAACUAUGGGUGCAGGGGGUCGAUAAGGAGGUACCCUAAAUUAUACUCAAUUGCAUUGCCAAGUUGAACAUACAUA______ ......((.(((((.((((.(((((...............))))).))))((((..((........))..))))................)))))))...................... (-21.06 = -20.58 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:10 2006