Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,808,732 – 9,808,827 |
Length | 95 |
Max. P | 0.999888 |
Location | 9,808,732 – 9,808,827 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 98.31 |
Mean single sequence MFE | -23.18 |
Consensus MFE | -23.10 |
Energy contribution | -22.86 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.76 |
Structure conservation index | 1.00 |
SVM decision value | 4.39 |
SVM RNA-class probability | 0.999888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9808732 95 - 27905053 AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUUUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU ...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. ( -22.70) >DroSec_CAF1 15377 95 - 1 AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU ...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. ( -22.70) >DroSim_CAF1 15747 95 - 1 AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU ...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. ( -22.70) >DroEre_CAF1 15924 94 - 1 AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAA-AAGUUGAGCAAUUUUUUACACAAGCCAGGAGGAAUCCGU ...(((.(((((((.((((....)))))))...(((((((((....(((......-..)))....))))))))))))).))).(((....))).. ( -23.90) >DroYak_CAF1 15984 94 - 1 AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAA-AAGUUGAGCAAUUUUUUACACAAGCCAGGAGGAAUCCGU ...(((.(((((((.((((....)))))))...(((((((((....(((......-..)))....))))))))))))).))).(((....))).. ( -23.90) >consensus AACGGCAUGUGGCAACAAAGAGAUUUGUGCAAAUGAAAAAUUUAUAAGCACCAAAAAAGUUGAGCAAUUUUUUACGCAAGCCAGGAGGAAUCCGU ...(((.(((((((.((((....)))))))...(((((((((....(((.........)))....))))))))))))).))).(((....))).. (-23.10 = -22.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:09 2006