Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,799,716 – 9,799,813 |
Length | 97 |
Max. P | 0.806620 |
Location | 9,799,716 – 9,799,813 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.65 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -22.22 |
Energy contribution | -24.53 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.51 |
Structure conservation index | 0.73 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806620 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9799716 97 + 27905053 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUU----------UCUUUUGGUUUUUUUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((..(((((((((((((.....))----------)))))))))))...........)))))))))).). ( -27.82) >DroSec_CAF1 8642 93 + 1 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUU----------UCUUUUGGU----UUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((..(((((((((((((.....))----------)))))))))----)).......)))))))))).). ( -28.70) >DroSim_CAF1 9060 103 + 1 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUUUCUUUGCUUUUCUUUUGGU----UUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((..((((((((((((((.((........))))))))))))))----)).......)))))))))).). ( -33.00) >DroYak_CAF1 9014 102 + 1 GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUUUCUUUGCUUUUCUUUUGGU-----UUUUACAUAAAUGCGGCGCCG ..(..(((((.....)))))..)....(.(((((((((....((((((((((((((.((........))))))))))))))-----))..))).....)))))).). ( -32.60) >consensus GAGUUGAGUGAAAAACGCUUUUCAGUUGUCGCCGUUGUUUUCGAGCCAAAAGGAAACGCUUU__________UCUUUUGGU____UUUUUACAUAAACGCGGCGCCG ..(..(((((.....)))))..)....(.((((((.((((....((((((((((((.((........)))))))))))))).............)))))))))).). (-22.22 = -24.53 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:08 2006