Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,796,228 – 9,796,348 |
Length | 120 |
Max. P | 0.949208 |
Location | 9,796,228 – 9,796,348 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.89 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -20.32 |
Energy contribution | -20.85 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.03 |
Mean z-score | -1.55 |
Structure conservation index | 0.91 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9796228 120 + 27905053 CCAUUUUAGUUUGUCAUUAGCACCGGCUGAGAAUGUGGACGAUUUGAGUACCUCACCCAUUUCUUCCCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAAUUUAACCACUUU ....(((((((..((.(((((....)))))))((((((((((..((.((.....)).))..))...........(((....))).......))))))))..)))))))............ ( -23.30) >DroVir_CAF1 5323 120 + 1 CCAUUUUAGUUUGUCAUUAGCACCUGCUGAGAAUGUGGACGAUUUGAGUACUUCACCCAUUUCUUCCCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAAUUUAACCACUUU ....(((((((..((.(((((....)))))))((((((((((..((.((.....)).))..))...........(((....))).......))))))))..)))))))............ ( -23.70) >DroGri_CAF1 5943 120 + 1 CCAUUUUAGUUUGUCAUUAGCACCGGCUGAGAAUGUGGACGAUUUGAGUACCUCACCCAUCUCUUCCCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAAUUUAACAACUUU ....(((((((..((.(((((....)))))))(((((((((((.((((...))))...))).............(((....))).......))))))))..)))))))............ ( -23.10) >DroWil_CAF1 7010 120 + 1 CCAUUUUAGUUUGUCAUUAGCACCGGCAGAGAAUGUGGACGAUUUGAGUACUUCACCCAUUUCUUCCCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAAUUUAACCACUUU ....(((((((((((.........))))))..((((((((((..((.((.....)).))..))...........(((....))).......))))))))....)))))............ ( -20.30) >DroMoj_CAF1 5568 120 + 1 CCAUUUCAGUUUGUCAUUAGCACCCGCUGAGAAUGUGGAAGAUUUGAGCACUUCACCCAUUUCUUCUCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAAUUUAACCACUUU .........((((((...(((....)))(((((.((((..((..........))..))))...)))))))))))......(((((..((((.....)))))))))............... ( -21.50) >DroAna_CAF1 5694 120 + 1 CCAUUUCAGUUUGUCAUUAGCACCGGCUGAGAAUGUGGACGACUUGAGUACCUCACCCAUCUCCUCCCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAACUUAACCACUUU ...(((((((..(((....).))..)))))))((((((((....((((...))))...................(((....))).......))))))))..................... ( -21.80) >consensus CCAUUUUAGUUUGUCAUUAGCACCGGCUGAGAAUGUGGACGAUUUGAGUACCUCACCCAUUUCUUCCCGACAAAAACUAAAGUUAUUUAUGGUCCACAUAUAACUAAAUUUAACCACUUU .....((((((((((.(((((....)))))....(.(((.((..((.((.....)).))..)).))))))))..))))))(((((..((((.....)))))))))............... (-20.32 = -20.85 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:06 2006