Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,795,120 – 9,795,240 |
Length | 120 |
Max. P | 0.895696 |
Location | 9,795,120 – 9,795,240 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -30.79 |
Energy contribution | -30.98 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -0.98 |
Structure conservation index | 0.97 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9795120 120 - 27905053 GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUAGAAACAGCAGCCGAAACCCUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUAAAU ((..(((((.(((.((((((((...((.((......)).)).))))).))).....)))....((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -29.20) >DroVir_CAF1 4127 120 - 1 GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU ((((((((.((((.((((((((...(((((......))))).))))).))).....((((....))))...))))))))((((...((....))..))))............)))).... ( -33.10) >DroGri_CAF1 4451 120 - 1 GUGAUGUGCGAAGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU ((..(((((.....((((((((...(((((......))))).))))).)))............((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -32.10) >DroWil_CAF1 5953 120 - 1 GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUUUCUGUAGAAACAGCAGCCGAAACCUUAAUAUUAGCUGAUCUCCAUAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU ((..(((((((((.((((((((...((.((......)).)).))))).)))....))))....((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -31.10) >DroMoj_CAF1 4423 120 - 1 GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCAUAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU ((..(((((.....((((((((...(((((......))))).))))).)))............((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -32.10) >DroAna_CAF1 4650 120 - 1 GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACGGCAGCCGAAACUUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUAAAU ((..((((((((..((((((((...(((((......))))).))))).)))....))).....((((.((((((.(.....).)))))).))))..))))).))((......))...... ( -32.00) >consensus GUGAUGUGCGAGGAGGCGCUGUGCGUCAAUCUCUCUGUUGAAACAGCAGCCGAAACGUUAAUAUUAGCUGAUCUCCACAGUGCGGAUCAAUUGAAAGCACAAACGAUAGAUUUCAUUAAU ((..(((((.....((((((((...(((((......))))).))))).)))............((((.((((((.(.....).)))))).))))..))))).))((......))...... (-30.79 = -30.98 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:05 2006