Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,794,637 – 9,794,736 |
Length | 99 |
Max. P | 0.983379 |
Location | 9,794,637 – 9,794,736 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.93 |
Mean single sequence MFE | -27.56 |
Consensus MFE | -19.42 |
Energy contribution | -20.12 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.17 |
Mean z-score | -2.37 |
Structure conservation index | 0.70 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9794637 99 - 27905053 ACCAACAAUCGAUUCAA---CAAUCGCAACAGAAAGCAGAACUCCAGUCGAUGCAGUGGCCGCCAUGUGAGAUAUCUGAUGGAUCGAUUGGCGGAGAACCUC .((..(((((((((((.---(((((...(((....((...(((.((.....)).))).)).....)))..)))...)).)))))))))))..))........ ( -26.40) >DroSec_CAF1 3844 84 - 1 ACCAACAAUCGAUUCAA---CAAUCGCAACAGAAAGCAGAACUCCAGUCG---------------UGUGAGAAAUCUGAUGGAUCGAUUGGCGGAAAACCUC .((..(((((((((((.---...((......))...((((.(((((....---------------)).)))...)))).)))))))))))..))........ ( -23.10) >DroSim_CAF1 3844 84 - 1 ACCAACAAUCGAUUCAA---CAAUCGCAACAGAAAGCAGAACUCCAGUCG---------------UGUGAGAUAUCUGAUGGAUCGAUUGGCGGAAAACCUC .((..(((((((((((.---...((......))...((((.(((((....---------------)).)))...)))).)))))))))))..))........ ( -23.10) >DroEre_CAF1 3877 99 - 1 ACCAACAAUCGAUCCAA---CAUUUGCAAUGGAAAGCAGCACUCCAGCCGGUGCAGCAGGCAUGUUGAUGGAUACUUGAUGGAUCGAUUGGCGGCCAACCUU .((..(((((((((((.---((.......((((.........)))).(((...(((((....))))).))).....)).)))))))))))..))........ ( -31.10) >DroYak_CAF1 3891 102 - 1 ACCAACAGUCGAUCCAACAACAUUUGCAAUAGAAAGCAGAACUCCAGUCGCUGCAGCAGGCAUGUUGAUGGAUACUUGAUGGAUCGAUUGGCGGAAAACCUC .((..(((((((((((.(((..(((((........)))))..((((...(((((.....))).))...))))...))).)))))))))))..))........ ( -34.10) >consensus ACCAACAAUCGAUUCAA___CAAUCGCAACAGAAAGCAGAACUCCAGUCG_UGCAG__G_C____UGUGAGAUAUCUGAUGGAUCGAUUGGCGGAAAACCUC .((..(((((((((((.........((........)).......(((......(((((....)))))........))).)))))))))))..))........ (-19.42 = -20.12 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:04 2006